Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq44045 116 4e-21 seq27769 104 2e-17 seq43136 86.0 6e-12 >seq44045 Length=9771 Score = 116 bits (128), Expect = 4e-21 Identities = 620/970 (64%), Gaps = 39/970 (4%) Strand=Plus/Minus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 || || ||||| ||||| ||| || || |||| |||||| |||||||| |||| Sbjct 2298 GACGCAAGATTACACACAGCCACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCAC 2239 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 ||||| ||| ||||| ||||| |||| || || ||||||| ||||||||| ||| Sbjct 2238 AGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCC 2179 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGC 149003 |||||||||||||| ||| ||| || || ||||| || | || ||||| | Sbjct 2178 TTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACC---AC 2122 Query 149004 AGGTCCTGCGCGCGCACTTG-CTGCTCG--TAG--CGACCCTCCTGCTCGTA--TAAAGT 149056 || | ||| || |||| | |||| ||| | |||||| ||||||| | || Sbjct 2121 AGCTGCTGTGC-----CTTGATTACTCGCTTAGCTCTACCCTCGCGCTCGTACTTGTGGT 2067 Query 149057 ATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGG----GCACTTGTGCG 149112 ||| | | || ||| ||| || || |||||| | || || |||||| | | Sbjct 2066 ATAGATC--TTCAAACTCCTTTCCCCAGACATCGTCCAAGCCTGGTGCATCACTTG-GTG 2010 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGT-ACACGCGCTTCATAAACAGATCGGGCACC 149171 | || || |||| | ||||| || | ||| || | |||||| |||||| | | Sbjct 2009 AGAAC---AGACTCCACTCTCCGTCGGCTTCGCAC-CGTTCCATAAATAGATCGTTGATC 1954 Query 149172 CAGAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAG 149230 || || || | | || || || | | ||| || || | || |||| || Sbjct 1953 CACAGGCCGAAGAAAAGATCACGTG-CGCGCATCTCCTCTGAACCTGTGTTCTTCTTTAG 1895 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | || | || || || |||||||| ||||| | ||||| || | || || Sbjct 1894 ATCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTACATTGCAAATGCTCCAGG 1835 Query 149291 GCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||||| || || ||||| |||| ||| | ||||||| || || || | |||||| Sbjct 1834 ACGCTTGTTACCACCTTGGTCAACGTAGCGTGCGGTGTTGTTGAATACACGCAGCATAGG 1775 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAG-TAGAGCTAATGCGACTGCCGCGCGCTCGCACTT 149406 ||| || | | | || || | | ||| ||| || | | || | | Sbjct 1774 CACAAGTCCGTTAGAGTTTCCATTGGTTCCAGC-GATGTAGCTTTCTTTGGATCTGATCT 1716 Query 149407 TGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGC 149465 |||| ||||||| ||||| || ||| | ||| ||||| |||||| ||| | || Sbjct 1715 TGTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAGATCATCGCGCAGGTCTTC-AGG 1657 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525 || |||||| || || ||| |||| || || || || || || ||||| | | Sbjct 1656 GTGTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTGAGAAGGAAACACGATGATAGC 1597 Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGG 149585 || ||| | |||||||| ||||| ||| || ||||||||||| | ||| Sbjct 1596 TGGGGACGTCTTGTGCCGGCGTTGAACAGGGTAGGTGAAGCGTGTGTAAACCAACCCTGT 1537 Query 149586 CTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCG 149645 | | | ||| | || | | | || ||||| ||||||||||| || | Sbjct 1536 GATAGGTTGTTGTATGTTTCAATAGCCCCATCGATGTCGTCGCCATGGATACCCACACTC 1477 Query 149646 ACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG 149705 || ||||| ||||| ||||| |||||||| || ||||| | | |||| |||| Sbjct 1476 ACACGCATAAGCATGTGCTGAGGTCGCTCAGCAACTTTTCCGTCCAGACGCAGCAGGTAG 1417 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATG 149765 | |||| ||| ||| | || ||||||| ||||| |||||| || ||| |||| Sbjct 1416 GATCTCTCTAATGTTTTGAACCCGAAGTACTGGTAGTTAAAGTCACGATCGTAAACAATC 1357 Query 149766 GCGGCGTCGA 149775 || | || || Sbjct 1356 GCCGAGTTGA 1347 >seq27769 Length=1647 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||||||||| || || | | ||| | | | || || ||||| || || Sbjct 809 GTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCA-TCTTCAAGCTGTTTACC 867 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||| ||||| ||||| ||||||||||| ||||| ||| Sbjct 868 AGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGTATCTTGGCCTT 927 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||| || ||| |||||| |||| ||||| || || || || || || Sbjct 928 CACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTTCCAGTTAGTGT 987 Query 133643 TTTTACGAAAATCTGCATG 133661 || || ||||| |||||| Sbjct 988 CTTCACAAAAATTTGCATG 1006 >seq43136 Length=7188 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 || ||||||||||||||||||||||||||||| || ||||||| |||| | || Sbjct 4464 AGACACGCAAAGTCCGTGTGCAGGCCCTCGTCCGTGGAGATCAGCTGGTTGGACACCGCG 4405 Query 120700 AGGCC---GGGCATGATGCCTTTCGT-CTTGATGTAGAATATGGCGGCAAAGCTGCCCGA 120755 || || || ||| | ||| || ||||| |||| ||||| ||||||||| |||| Sbjct 4404 AGCCCCTTGGCCATTA-GCCCGCGGTCCTTGAGCCAGAAAATGGCCGCAAAGCTGGCCGA 4346 Query 120756 AAAGAACACGCCCTCCACGA 120775 ||||||| ||||| |||| Sbjct 4345 GAAGAACAGCCCCTCGACGA 4326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483151987821400