Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq37552 123 6e-23 seq37601 100 7e-16 seq27769 84.2 5e-11 >seq37552 Length=3269 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| ||||| || ||||| ||||| || ||| ||| Sbjct 3243 CAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCTTGGATGTCGAATCGAGTGAT 3184 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || || || Sbjct 3183 ACCATCGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCCCCTGATCAGCAG 3124 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| |||||||| ||||||||||| | || |||||||||||||| | Sbjct 3123 CGTTTGATCTTCGCTGGAAAGCAACTGGAAGATGGACGTACCCTGGCCGATTACAACATT 3064 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| |||||||||||||||||||| ||| | || || Sbjct 3063 CAGAAGGAGTCTACTCTTCACCTTGTGTTGCGTCTCCG 3026 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| |||||||||||||||||||| ||||| | || || || |||| || Sbjct 3026 CGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTA 3085 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| |||||||| |||||||| | || || ||| Sbjct 3086 CGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGA 3130 >seq37601 Length=3285 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| |||||||| || ||||| ||||||| |||||||| || | || Sbjct 2432 CGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGCTAGTGTG 2373 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||||||||| |||||||||||||| || || ||| Sbjct 2372 CGTCCATCTTCCAGCTGCTTACCGGCGAAGATAAGACGCTGCTGA 2328 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 |||||||||||||| |||||| ||||||||||| | || | ||||| || ||| ||||| Sbjct 2338 CTTATCTTCGCCGGTAAGCAGCTGGAAGATGGACGCACACTAGCCGACTATAACATCCAG 2397 Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || |||||||| ||| | | ||||| Sbjct 2398 AAGGAGTCCACCCTTCACCTGGTTCTTCGTCTTCG 2432 >seq27769 Length=1647 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 204761 AAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCT 204820 ||||| || |||||||| ||||||||||| | |||||||||||| | || | |||||| Sbjct 794 AAAACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCT 853 Query 204821 TCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| || || || ||||| || || || ||| Sbjct 854 TCAAGCTGTTTACCAGCAAAGATCAGTCGCTGCTGA 889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181147204615685