Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq39701 232 1e-54 seq44045 105 1e-16 >seq39701 Length=4095 Score = 232 bits (256), Expect = 1e-54 Identities = 396/564 (70%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||| || || | || ||||| ||||| || || ||||| |||| |||||| Sbjct 2159 CGAGCCCCTCCTCAGAGAAAACCCTCGTCGCTTCGTGCTATTCCCTATCCAATACCAGGA 2218 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| ||||| || || ||||| | |||||||| || | Sbjct 2219 GATCTGGCAGATGTAC-AAGAAGGCGGAGGCTTCTTTCTGGACTGTTGAGGAGGTTGATC 2277 Query 1455835 TCGGCGCC-GACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 | | | | || | |||||| | || | || | ||||||||| ||| | Sbjct 2278 T-GTCTCGTGATCTAGCTGACTGGGAGAACCTTAAGGATGGCGAGCGCCACTTCTTATCC 2336 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 || || | || ||| ||||| ||||| ||||| || ||| |||||| || || || Sbjct 2337 CATGTGTTGGC-TTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAATCTCCTCGAGCG 2395 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 ||| | || || ||| | | |||||||||| || ||||| |||||||||||||| Sbjct 2396 CTTCAGCGGTGAAGTACAAATCGCCGAGGCACGTTGCTTCTACGGATTCCAGATCGCCAT 2455 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || |||||||||||||| | ||||| || ||||| || ||| || ||||| Sbjct 2456 TGAGAACATCCACTCTGAGATGTACTCCACGCTTATCGAGACATACATCCGTGACCCCCG 2515 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 |||||||| |||| ||| ||| || || || | || | || | |||||||||||| Sbjct 2516 TGAGAAGGATAACCTATTTAACGCTATTGAGACACTCCCTGCCGTCAAGAAAAAGGCCGA 2575 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 |||||| | |||||||||||| | || ||||| || ||| | ||||| | || | Sbjct 2576 CTGGGCCCTCAAGTGGATCAACGACGA-TGCCTC--CAGTTTCGGTGAGCGTGTGGTAGC 2632 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||| || || || ||||| ||||||||||| ||| || | | ||||||||| | || Sbjct 2633 CTTCGCTGCAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCCTCGATCTTTTGGATGAA 2692 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| || || ||||| || || Sbjct 2693 GAAGCGTGGGCTAATGCCTGGACT 2716 >seq44045 Length=9771 Score = 105 bits (116), Expect = 1e-16 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 |||| ||| | |||| |||||| | | ||| || | |||||||||||| || |||||| Sbjct 2111 GCACAGCAGCTGTGGTTCGCCATTCTAGAGGCGCAGACCGAGACCGGCACACCATACATG 2170 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 | |||||||| || ||||| | || ||||||||||| ||||||||| | || | Sbjct 2171 CTGTACAAGGATGCGTGCAACCGCAAGAGTAACCAGCAGAATTTGGGCACCATCA-AGTG 2229 Query 262205 -GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAA 262263 | || |||||| ||||||||| ||| || || ||| ||| | |||||| || Sbjct 2230 CTCTAATCTGTGCTGTGAGATCGTCGAGTACTCTTCCCCCGACGAAGTGGCTGTGTGTAA 2289 Query 262264 CCTCTCGAGCGTGGCCCTGCCCAAGTTTGTCATCCCCGAC 262303 || || | |||||||||| |||| |||| ||||| Sbjct 2290 TCTTGCGTCCCTGGCCCTGCCTAAGTACGTCAAGACCGAC 2329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173520539986570