Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq39701 197 2e-45 seq44045 183 4e-41 >seq39701 Length=4095 Score = 197 bits (218), Expect = 2e-45 Identities = 389/575 (68%), Gaps = 3/575 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || |||||||| || || ||||||||||| || || || || || || || || ||| Sbjct 2773 CAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAGT 2714 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 ||||||||||| |||||||| || | |||||| || | ||||| || ||||| || ||| Sbjct 2713 CCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAAAAAG 2654 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT---TGTATCATTATGT 39793 || || |||||||| || || || || | | ||| ||| |||| | ||| | | Sbjct 2653 ATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTCGTTG 2594 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||||| | ||||| || || || ||||| || ||| | ||| || ||||| ||| Sbjct 2593 ATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGCGTTA 2534 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 || || | || || ||| || | ||||| || || | | ||||| Sbjct 2533 AATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGATAAGCGTGGAGTACATC 2474 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || |||||||| ||||| || ||||| |||||||| || || | ||| || | ||| Sbjct 2473 TCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGGCGATT 2414 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 ||||| || | || | || | ||| || ||||| || |||||||| || || Sbjct 2413 TGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGGCAGCG 2354 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCA 40093 || || ||||| ||||| | || | || | | | || | ||||||| Sbjct 2353 AAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCCAGTCA 2294 Query 40094 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTG 40153 | ||| || | ||| || || ||| | ||||| || || ||||| ||||| ||| Sbjct 2293 GCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCTTCTTG 2234 Query 40154 TACATGTTCCATATATCACGATATTGTATTGGAAA 40188 ||||| | ||| || || | ||||| || || || Sbjct 2233 TACATCTGCCAGATCTCCTGGTATTGGATAGGGAA 2199 >seq44045 Length=9771 Score = 183 bits (202), Expect = 4e-41 Identities = 1094/1746 (63%), Gaps = 51/1746 (3%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || |||||| | || || || || || || || || | ||| | ||| ||||| || || Sbjct 2892 AGCAGATGCTGGTTGACAATCTGGAACTCTCCTGAGAGCACACGACGTGTGTAGATGTTC 2833 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 || || || || | || ||||| |||||||| ||||| || || || ||| Sbjct 2832 GATGTGTAGGGCTCTATGCTCTCGTTATTACCCAGAATCTGAGCTGTGCTAGCGGTAGGC 2773 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATG--ATTTTATCTTTTAGAT 68875 ||||| || ||||| | |||||| || || || | | | || | || || | | Sbjct 2772 ATAGGGGCGACCAAAAGTGAATTTCTGAGTCC--GTATAAAGCCATATCCTCCTTGACCT 2715 Query 68876 GTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGT 68935 |||||| ||| || || ||||||| ||| | |||| | || | || || | Sbjct 2714 TAGCCCAATCGTGTCTATCCGAGGGGACAACATCCCACATATCGAACTGCAAGATACCCT 2655 Query 68936 TACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAAC 68995 | || || || ||| || || || ||||| || ||| | || | || || Sbjct 2654 TGCTCGCTGGGGAACCAGCGTAGGTCTCGTAAGGACCCTCCCTCTTGGCAATCGCAATAC 2595 Query 68996 TTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 69055 | || | |||| ||| || || || ||||| || | ||| || || | |||| | Sbjct 2594 TCTCCGTCACCGCACTGTAGTAGATAGTCTCGAAGATGTGCTTGTTCAGCACGCGTGCAT 2535 Query 69056 CTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAA 69115 | | ||||||||||| | | | || || || ||||| | || || || || | Sbjct 2534 CGGGGCTATCGAATGGCAGGCGCATCAAGATGAACGCGTCTGCAAGGCCTTGTACACCTA 2475 Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 ||||||||||| || | ||| || | |||||||| || | ||| ||||| || | Sbjct 2474 GACCGATAGGTCGGTGGCGCTTGTTACTCTTCTCAGCTTCAGGCACAGGGTAATAGTTGA 2415 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 || || ||||| || ||||| || ||| | | || |||| || || | || Sbjct 2414 CGTCGATGATTTTGTTTAGATTGCGCGTGGCTATTCTGGTGACCTCCTCGAGCTTCACAA 2355 Query 69236 AATCAAA-TCG-----------TCCATCTATA---ACAAACATATTCAGTGCTACAGATG 69280 | || || ||| ||| || | || || || ||| || | || | Sbjct 2354 AGTCGAACTCGGGGCCGTTTGCTCCGTCGGTCTTGACGTACTTAGGCAGGGCCAGGGACG 2295 Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340 | |||||||| || || || || | | | || | | ||||| || |||| Sbjct 2294 CAAGATTACACACAGCCACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCACAGAT 2235 Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400 || || ||||| || |||| ||| ||||| |||||||| ||| || || ||||||| Sbjct 2234 TAGAGCACTTGATGGTGCCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCCTTGT 2175 Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460 | || || | || || || || || |||| | || | ||| | ||| | | Sbjct 2174 ACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCACAGCTGCT 2115 Query 69461 TAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT--TCATA-TTGTGTATATAGCCGTT 69517 || || ||||| ||| | | || | || || || ||||| ||||| || Sbjct 2114 GTGCCTTGATTACTCGCTT--AGCTCTACCCTCGCGCTCGTACTTGTGG-TATAGATCTT 2058 Query 69518 CGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACC 69577 | || || | |||||| ||||| ||||| || || ||| |||| | | || ||| Sbjct 2057 CAAACTCCTTTCCCCAGACATCGTCCAAGCCTGGTGCATCACTTGGTGAGAACA--GACT 2000 Query 69578 ACACATCATCATC--CTTAACTC-GTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| || | || ||| | | ||| ||||||||||||| ||||| || | | | Sbjct 1999 CCAC-TCTCCGTCGGCTTCGCACCGTTCCATAAATAGATCGTTGATCCACAGGCCGAAGA 1941 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | ||||| | | | | || || ||||| || || || ||||| || ||||| | Sbjct 1940 AAAGATCACGTGCGCGCATCTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAACTCAA 1881 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 ||||| | ||||| || ||||| || || || | |||| || || || || || | Sbjct 1880 AGATATCTGCGTGCCAGGGCTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTTACCAC 1821 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | || || | ||| | || ||||| || | || | |||||| || | || || |||| Sbjct 1820 CTTGGTCAACGTAGCGTGCGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGTTAG 1761 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | || ||||| ||||||| || || ||| || | | | || || || || | Sbjct 1760 AGTTTCCATTGGTTCCAGCGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTGAGTC 1701 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || ||||| || | || ||||| | || || |||| |||| || ||||| | Sbjct 1700 CGATACCTCCGGCACTCTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTT 1641 Query 69935 CTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTC 69994 | ||| || || || | ||||| ||||| || | || || || | || | Sbjct 1640 CAATGGAGTCGTCCTCGATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCTTGTGC 1581 Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG 70054 | || || || | ||||| || ||||| || ||||| | || || ||||||| Sbjct 1580 CGGCGTTGAACAGGGTAGGTGAAGCGTGTGTAAACCAACCCTGTGATAGGTTGTTGTATG 1521 Query 70055 TTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 |||||||||| || || || ||| || || | |||||||| | ||| | Sbjct 1520 TTTCAATAGCCCCATCGATGTCGTCGCCATGGATACCCACACTCACACGCATAAGCATGT 1461 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 |||||||||| || | ||| | | || |||||| ||| | || | |||| Sbjct 1460 GCTGAGGTCGCTCAGCAACTTTTCCGTCCAGACGCAGCAGGTAGGATCTCTCTAATGTTT 1401 Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTAT 70234 | ||||| || || | ||| |||||| | ||||||| ||| | || || ||||| Sbjct 1400 TGAACCCGAAGTACTGGTAGTTAAAGTCACGATCGTAAACAATCGCCGAGTTGAGTTT-- 1343 Query 70235 CCTTATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGATC--------- 70285 || | | |||| || || | | ||| | ||||||| | Sbjct 1342 -CTCAGAGTTGG-------CTCGCACACGCTGGATGAACTCCTCGGAGACCAGAGGACTC 1291 Query 70286 -GTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGt 70344 |||| | || || || ||||| ||| | ||||| | ||| || ||||| || | Sbjct 1290 TGTTTGTCGTTCTTGGGGTTAACGTAGGTAGCCAAATCATTCATAACCTCACTGAACACC 1231 Query 70345 ttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 || |||||||||||||| | ||| || || || || | ||| || || ||||| ||||| Sbjct 1230 TTCTTTGTTTCCTTGTGCAGATTGGACATCGCAATGCGGGCAGCCAGGATAGCGTAGTCG 1171 Query 70405 GGATGT 70410 || ||| Sbjct 1170 GGGTGT 1165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686526835775400