Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq39701 125 6e-24 >seq39701 Length=4095 Score = 125 bits (138), Expect = 6e-24 Identities = 459/708 (65%), Gaps = 12/708 (2%) Strand=Plus/Plus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 || || || ||||| || || || ||||| |||||||| || || |||| || || ||| Sbjct 2199 TTCCCTATCCAATACCAGGAGATCTGGCAGATGTACAAGAAGGCGGAGGCTTCTTTCTGG 2258 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAA-ACCAC 43826 || | || || |||||| || || || |||| | ||| | | |||| | | Sbjct 2259 ACTGTTGAGGAGGTTGATCTGTCTCGTGATCTAGCTGACTGGGAGAACCTTAAGGATGGC 2318 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 || || | |||| | | || ||||| || || ||||| || || || || || | Sbjct 2319 GAGCGCCACTTCTTATCCCAT--GTGTTGGCTTTCTTCGCTGCCAGTGATGGTATTGTGA 2376 Query 43887 ATGAAAATTTGGTTAGTCGGTTT-GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 | || ||| | | || || ||| ||||| ||| | | || ||||| || || Sbjct 2377 ACGAGAATCTCCTCGAGCGCTTCAGCGGT-GAAGTACAAATCGCCGAGGCACGTTGCTTC 2435 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || || || ||||| || || || || || || |||||| || || || Sbjct 2436 TACGGATTCCAGATCGCCATTGAGAACATCCACTCTGAGATGTACTCCACGCTTATCGAG 2495 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 || |||||| || | |||||| || | ||||| || || || ||| | ||| Sbjct 2496 ACATACATCCGTGACCCCCGTGAGAAGGATAACCTATTTAACGCTATTGAGACACTCCCT 2555 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTT 44122 || | || | || || ||||||||||| || ||||| || ||| || ||| Sbjct 2556 GCCGTCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCAACGACGATGCCTCCAGTTTC 2615 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || || | || || || || | || || || || || || || || || ||||| Sbjct 2616 GGTGAGCGTGTGGTAGCCTTCGCTGCAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCC 2675 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | ||||| || || | |||||||| | || || || |||||||| Sbjct 2676 TCGATCTTTTGGATGAAGAAGCGTGGGCTAATGCCTGGACTAACTTTCTCCAATGAGTTG 2735 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGA 44302 || || | ||||| || | || || || |||||||| || ||| | | || ||| Sbjct 2736 ATCAGCAGAGATGAGGGACTCCACTGTGACTTTGCTTGTCTGCTACACGACCACCT-GGA 2794 Query 44303 GACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAA 44362 ||| || || | ||| | | || ||| ||||||| || || ||||| || Sbjct 2795 -ACGTAAACCCAGCGCCGAAGTCGTGAAGAG-TATCATTGTAGATGCTGTTAAGATCGAG 2852 Query 44363 CAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT 44410 |||||||| |||| || | || || | |||| ||||||||| Sbjct 2853 CAAGAATTCCTGACGGATGCCCTTCCCGTGGCTCTAATTGGAATGAAT 2900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397240514882425