Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq44045 154 2e-32 >seq44045 Length=9771 Score = 154 bits (170), Expect = 2e-32 Identities = 567/879 (65%), Gaps = 23/879 (3%) Strand=Plus/Minus Query 111218 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 111277 ||||| ||||| || ||||| | || || | ||| || |||||| || || Sbjct 2322 TTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGGGAA 2263 Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 | |||||| | || || || | || || | ||| || || |||||||||| ||| Sbjct 2262 GAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGG 2203 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 |||||||| |||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 2202 TTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGC 2143 Query 111398 GATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 111456 | | ||||| || ||| | | | | | || | | | || || || | ||||| Sbjct 2142 GCCTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGATTACTCGC-TTAGCTCTACCCTC 2084 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC---ACCGCGTCGGAGAGACC 111513 ||||||||| ||| || |||||||||||| ||| || |||| || || Sbjct 2083 GCGCTCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAG---CC 2027 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 |||||| | ||| |||| ||| ||| | || | | || ||| | ||| || Sbjct 2026 TGGTGCATCACTTGGTGAGAACAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAA 1967 Query 111574 AAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631 || || ||||||||| || |||| ||||| | || ||| || |||| Sbjct 1966 TAGATCGTTGATCCACAGGCCGAAGAAA--AGATCACGTGCGCGCATCTCCTCTGAACCT 1909 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||| || || |||||||| | |||||| |||||||| ||||| || || | | Sbjct 1908 GTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTACATT 1849 Query 111692 GCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745 || | | ||| ||||| ||| |||| | || ||||| || ||| ||| Sbjct 1848 GCAAATGCTCC---AGGACGCTTGTTACCACCTTGGTCAACGTAGCGTGCGGTGTTGTTG 1792 Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT 111805 ||||| || ||||| || | || || | || | ||||| || || || || | Sbjct 1791 AATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAGCGAT-GTAGCT 1733 Query 111806 TT-ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTG 111864 || |||| ||| | | || | || | || ||||| || || | ||| ||||| Sbjct 1732 TTCTTTGGATCTGATCTTGTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAGATCAT 1673 Query 111865 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAG 111924 ||| || | | || || |||||||| | || ||||| |||| | | | || ||| Sbjct 1672 CGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTGAGAAG 1613 Query 111925 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 ||| || || | ||| || | | ||| || || ||||| ||||| |||| ||||| Sbjct 1612 GAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGGGTAGGTGAAGCGTG 1553 Query 111985 AATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044 | ||| ||| || || | |||| |||||| || | | ||| ||||| || || Sbjct 1552 TGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCATCGATGTCGTCGCC 1493 Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||| || | || ||||| | ||||| ||| || Sbjct 1492 ATGGATACCCACACTCACACGCATAAGCATGTGCTGAGG 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627682774956000