Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq44045 140 4e-28 seq44023 82.4 9e-11 seq39701 82.4 9e-11 >seq44045 Length=9771 Score = 140 bits (154), Expect = 4e-28 Identities = 568/884 (64%), Gaps = 31/884 (4%) Strand=Plus/Minus Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 ||||| |||||||| ||||| | ||||| ||||||||||||| || || | Sbjct 2322 TTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGGGAA 2263 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 | |||||| | || || ||||| || || | ||| ||||||||||| |||| || Sbjct 2262 GAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGG 2203 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||| |||||||||||||| ||||||||||| || || ||||| || || Sbjct 2202 TTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGC 2143 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAG---CTGGCACAGTGGCGTTGGCTCGCCCC 118928 | || ||||| || || ||| | || | || | | | || || |||| ||| Sbjct 2142 GCCTCTAGAATGGCGAACC--ACAGCTGCTGTGCCTTGATTACTCGC-TTAGCTCTACCC 2086 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || ||||||||| ||| || |||||||||| | ||| | | || | ||| Sbjct 2085 TCGCGCTCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAGCCT 2026 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 ||||| | | ||| |||| ||| ||| | || | | || ||| | ||| || Sbjct 2025 GGTGCATCACTTGGTGAGAACAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAAT 1966 Query 119049 AGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGACAGCG-AGCTTCT-TCATCC--- 119102 || || |||||| || |||| |||| ||||| || ||| | || || | | || Sbjct 1965 AGATCGTTGATCCACAG-GCCGAAGAAAAGATCACGTGCGCGCATCTCCTCTGAACCTGT 1907 Query 119103 -CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || || ||| |||| || || | |||||| |||||||| || || ||||| Sbjct 1906 GTTCTTCTTTAGA------TCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTA 1853 Query 119162 CACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGC 119215 || || | || || | |||| |||| | |||| || || | || ||| Sbjct 1852 CATTGCAAATGCTCC---AGGACGCTTGTTACCACCTTGGTCAACGTAGCGTGCGGTGTT 1796 Query 119216 GTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACG 119275 ||| |||||||| ||||| || | | || | || | ||||| || || || Sbjct 1795 GTTGAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAGCGAT-GT 1737 Query 119276 AGACTT-ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 119334 || || |||| ||||| | ||| | || | || ||||| || || | ||| |||| Sbjct 1736 AGCTTTCTTTGGATCTGATCTTGTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAGA 1677 Query 119335 TTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 119394 | |||||| | | || || |||||| || || || ||||| ||| ||| || Sbjct 1676 TCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTGA 1617 Query 119395 TGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCG 119454 ||||| || || | || || | ||| || |||||||| || || |||| | Sbjct 1616 GAAGGAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGGGTAGGTGAAG 1557 Query 119455 CGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 |||| | ||| ||| || || | |||| ||| || || | | | ||||| | Sbjct 1556 CGTGTGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCATCGATGTCGT 1497 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 | || || ||||| | || ||||||| ||||| || ||| Sbjct 1496 CGCCATGGATACCCACACTCACACGCATAAGCATGTGCTGAGGT 1453 >seq44023 Length=9660 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTG-ATTTTCACGGGCAACTTCAAAGAT 14301 ||||| || ||||||||||| ||||| |||||||| | ||||| | || |||| |||| Sbjct 3047 GCGTCGATCTCATCGATGAAGACGATGCATGGTTGGACTTTCA-GCGCTGCTTCGAAGAG 2989 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 ||||| |||| ||||| ||||||||||||||||| | |||| Sbjct 2988 TTCTCGGACTCGTCGCGCACCCACACCCACAAACATCTCATCGAAAT 2942 >seq39701 Length=4095 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || |||||| ||||| || | | ||| | ||||| ||||| || || Sbjct 2770 GCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAGTCCA 2711 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || |||||||||| ||| || |||| ||| ||||||||||| ||||| Sbjct 2710 GGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAAAAAGATA 2651 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCA 130168 ||||| || ||||| || | | ||||||| Sbjct 2650 CCCTCTACTGCAGCGAAGGCTACCACACGCTCA 2618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618091311376600