Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq44045 158 1e-33 >seq44045 Length=9771 Score = 158 bits (174), Expect = 1e-33 Identities = 563/872 (65%), Gaps = 15/872 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| ||| | ||||| ||||| || ||||| ||| | Sbjct 1454 CCTCAGCACATGCTTATGCGTGTGAGTGTGGGTATCCATGGCGACGACATCGATGGGGCT 1513 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | || |||||| |||| | || || ||| ||| | ||||| |||| ||||| ||| Sbjct 1514 ATTGAAACATACAACAACCTATCACAGGGTTGGTTTACACACGCTTCACCTACCCTGTTC 1573 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || ||| | | ||||| | || || |||||| || | | | |||| ||| Sbjct 1574 AACGCCGGCACAAGACGTCCCCAGCTATCATCGTGTTTCCTTCTCACAATCGAGGACGAC 1633 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | |||||||| || || | | || ||| ||||| ||| | || || Sbjct 1634 TCCATTGAAGGTATCTACAACACCCTGAAGACCTGCGCGATGATCTCCAAGAGTGCCGGA 1693 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAAT-AAATCTCGTATTCGGGGGACAAA 104520 ||||| || | || | || | | ||| |||| ||| || || || || || Sbjct 1694 GGTATCGGACTCAACGTTCACAAGATCAGATCCAAAGAAAGCTAC-ATCGCTGGAACCAA 1752 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| | || | || || | || ||||| || ||||| ||| ||| || ||||| || Sbjct 1753 TGGAAACTCTAACGGACTTGTGCCTATGCTGCGTGTATTCAACAACACCGCACGCTACGT 1812 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | |||| ||| ||||| ||| | | ||| | || || ||||| ||||| Sbjct 1813 TGACCAAGGTGGTAACAAGCGTCCT---GGAGCATTTGCAATGTACCTAGAGCCCTGGCA 1869 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| |||||| | |||||||| || | ||| |||| |||||| ||| Sbjct 1870 CGCAGATATCTTTGAGTTCCTGGATCTAAAGAAGAACACAGGTTCAGAGGAGATGCGCGC 1929 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG-AAGAGAGTTGAGGAGA 104753 || ||||| |||| || || ||||| ||||| || ||| || | | || || Sbjct 1930 ACGTGATCTTTTCTTCGGCCTGTGGATCAACGATCTATTTATGGAACGGTGCGAAGCCGA 1989 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 || | ||| ||| || | ||| | ||||| || | ||||| | ||| Sbjct 1990 C-GGAGAGTGGAGTCTGTTCTCACCAAGTGATGCACCAGGCTTGGACGATGTCTGGGGAA 2048 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 |||||||||||| || ||| ||||||||| || ||| | || | |||| | Sbjct 2049 AGGAGTTTGAAGATCTATACCACAAGTACGAGCGCGAGGGTAGAGCTAA-GCGAGTAATC 2107 Query 104874 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || | | | ||||| || ||||| || | || |||||||| || ||||||||| Sbjct 2108 AAGGCACAGCAGCTGTGGTTCGCCATTCTAGAGGCGCAGACCGAGACCGGCACACCATAC 2167 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| ||||| || || || |||| |||||||| || |||||||||| |||||| Sbjct 2168 ATGCTGTACAAGGATGCGTGCAACCGCAAGAGTAACCAGCAGAATTTGGGCACCATCAAG 2227 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 | || ||||| || || ||| | || | | | || || |||||||||| Sbjct 2228 TGCTCTAATCTGTGCTGTGAGATCGTCGAGTACTCTTCCCCCGACGAAGTGGCTGTGTGT 2287 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 || || || || | || || || ||||| || Sbjct 2288 AATCTTGCGTCCCTGGCCCTGCCTAAGTACGT 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582936470541400