Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq44045 208 8e-49 seq41229 114 1e-20 >seq44045 Length=9771 Score = 208 bits (230), Expect = 8e-49 Identities = 747/1150 (65%), Gaps = 45/1150 (4%) Strand=Plus/Minus Query 78689 CCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAG 78748 ||||||| || || | |||||||| | ||| || || || | | |||||||||| Sbjct 2681 CCCACATATCGAACTGCAAGATACCCTTGCTCGCTGGGGAACCAGCGTAGGTCTCGTAAG 2622 Query 78749 ATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAG--CAGGGCCGCGTGGTACACAGCCTC 78806 |||||| |||||| | ||||| |||| || || || ||| | || ||| Sbjct 2621 GACCCTCCCTCTTGGCAA--TCGCAATACTCTCCGTCACCGCACTGTAGTAGATAGTCTC 2564 Query 78807 GAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCAT 78866 ||||||| |||||| ||| |||| || | || ||||| | |||| | || || Sbjct 2563 GAAGATGTGCTTGTTCAGCACGCGTGCATCGGGGCTATCGAATGGCAGGCGCATCAAGAT 2504 Query 78867 GAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTT 78926 ||| | || || ||||| || || || | | |||| |||||||||||| |||| ||||| Sbjct 2503 GAACGCGTCTGCAAGGCCTTGTACACCTAGACCGATAGGTCGGTGGCGCTTGTTACTCTT 2444 Query 78927 TCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGT 78983 | || || | | |||||| |||| ||||||| ||| || || ||||| Sbjct 2443 CT---CAGCTTCAGGCACAGGGTAATAGTTGACGTCGATGATTTTGTTTAGATTGCGCGT 2387 Query 78984 GACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGA------TTTCCT----- 79032 | | | | || ||||| | | || | || || || | ||| || Sbjct 2386 GGCTATTCTGGTGACCTCCTCGAGCTTCACAAAGTCGAACTCGGGGCCGTTTGCTCCGTC 2327 Query 79033 ----TTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGG 79088 |||| | | | || ||| ||| || || || || ||||| ||| ||||| || Sbjct 2326 GGTCTTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGG 2267 Query 79089 GCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTT 79148 | ||| ||||| ||| || ||||| |||||| ||||||||||||| | |||| Sbjct 2266 GGAAGAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTG 2207 Query 79149 CTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAAC 79208 |||||| ||||| ||| || || |||||||| |||||| || || |||||||| Sbjct 2206 CTGGTTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGT 2147 Query 79209 CTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACC 79268 ||| || |||| | || ||| | | | | ||| || || ||| | ||| Sbjct 2146 CTGCGCCTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGATTACTCGCTTAGCTCTACC 2087 Query 79269 CT-GTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGC 79327 || | || ||||| | |||| | || | || ||| || |||||||| || || Sbjct 2086 CTCGCGC-TCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAGC 2028 Query 79328 CCGG-GCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTC--CTTCTCAACCTTCTCCA 79384 | || ||| || || | | ||| ||| || |||| |||| || | | |||| Sbjct 2027 CTGGTGCA-TCACTTGGTGAGAACAGACTCCACTCTCCGTCGGCTTCGCACCGT--TCCA 1971 Query 79385 TGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444 | || || || |||||||||| | ||| || || || ||||||||||| | Sbjct 1970 TAAATAGATCGTTGATCCACAGGCCGAAGAAAAGATCACGTGCGCGCATCTCCTC-TGAA 1912 Query 79445 CCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 |||| |||| || || || || || | ||| || |||||||| ||||| || || Sbjct 1911 CCTGTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTAC 1852 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 || || || | || |||||| || || |||| ||||| || || ||||||||| Sbjct 1851 ATTGCAAATGCTCCAGGACGCTTGTTACCACCTTGGTCAACGTAGCGTGCGGTGTTGTTG 1792 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623 || || || ||||| ||||| | |||| | | || || || || || |||| Sbjct 1791 AATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAGCGA----TGTA 1736 Query 79624 CCGCTCGCCCGA-ATGTTC--GAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGAT 79679 | || || || || | | | || || |||||| || |||| | ||||||||| Sbjct 1735 GCTTTCTTTGGATCTGATCTTGTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAGAT 1676 Query 79680 GTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGAC 79739 |||||| ||| || || | |||||| || || || |||||||||| || | || Sbjct 1675 CATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTGAG 1616 Query 79740 CAGGAAGCAGCTCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCG 79798 ||||| || || | ||| ||| || | || ||||||||||| ||||| || | | Sbjct 1615 AAGGAAACACGATGATAGCTG-GGGACGTCTTGTGCCGGCGTTGAACAGGGTAGGTGAAG 1557 Query 79799 CGTGCGTGAA 79808 |||| || || Sbjct 1556 CGTGTGTAAA 1547 Score = 192 bits (212), Expect = 6e-44 Identities = 876/1365 (64%), Gaps = 63/1365 (5%) Strand=Plus/Plus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA-ACAACCCGCAGATGTCGAG 19254 || || ||||| | || ||||| ||||||||||| || | || ||| ||| | || Sbjct 1547 TTTACACACGCTTCACCTACCCTGTTCAACGCCGGCACAAGACGTCCC-CAGCTATCATC 1605 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 |||||||| | | || |||| ||| |||||| || |||||| | || || ||| Sbjct 1606 GTGTTTCCTTCTCACAATCGAGGACGACTCCATTGAAGGTATCTACAACACCCTGAAGAC 1665 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCG-AATATCCGGT 19373 |||||| ||||||||| | |||| |||||||| || || | || || ||| | | Sbjct 1666 CTGCGCGATGATCTCCAAGAGTGCCGGAGGTATCGGACTCAAC-GTTCACAAGATCAGAT 1724 Query 19374 C----GAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATG 19429 | || | |||| || ||| || || ||| | |||| | || || ||| Sbjct 1725 CCAAAGAAAGCTACA----TCGCTGGAACCAATGGAAACTCTAACGGACTTGTGCCTATG 1780 Query 19430 CTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGC 19489 || || || ||||||||||| || | ||||| |||| || || ||| || || Sbjct 1781 CTGCGTGTATTCAACAACACCGCACGCTACGTTGACCAAGGTGGTAACAAGCGTCCTGGA 1840 Query 19490 TCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGC 19549 | || || || ||||| ||||| |||||||| || || | || ||||| || || Sbjct 1841 GCATTTGCAATGTACCTAGAGCCCTGGCACGCAGATATCTTTGAGTTCCTGGATCTAAAG 1900 Query 19550 CTGAAC-CAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCA-CGGCCTTGTGGATTC 19607 |||| |||| | | |||||||||||| || || || ||| |||||| |||||| Sbjct 1901 AAGAACACAGGTTCA-GAGGAGATGCGCGCACGTGATCTTTTCTTCGGCCT-GTGGATCA 1958 Query 19608 CGGACCTATTCATGGAGAAGGTTGAGAAG--GACGAAGAATGGCACCTGATGTGCCCGCA 19665 || ||||| ||||| | | || |||| |||| ||| ||| ||| | | || Sbjct 1959 ACGATCTATTTATGGA--ACGGTGCGAAGCCGACGGAGAGTGGAGTCTGTTCTCACCAAG 2016 Query 19666 CGAATGC-CCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTT 19724 || ||| || ||| | ||| |||| || ||| ||| | || | |||| | | Sbjct 2017 TGA-TGCACCAGGCTTGGACGATGTCTGGGGAAAGGAGTTTGAAGATCTATACCACAAGT 2075 Query 19725 ACGTAGCCC-AGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTC 19783 ||| ||| | |||| | ||| || || ||| | | | | ||| | | | Sbjct 2076 ACG-AGCGCGAGGGTAGAGCTAAGCGAGTAATCAAGGCACAGCAGCTGTGGTTCGCCATT 2134 Query 19784 CTCAAAAGC-CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGC 19842 || | | || ||| ||||||||||||||| |||||| |||||||| || ||| Sbjct 2135 CT-AGAGGCGCAGACCGAGACCGGCACACCATACATGCTGTACAAGGATGCGTGCAACCG 2193 Query 19843 CAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCAT 19902 |||| || ||| |||| | ||| | ||||||| || || ||||| ||| ||| | Sbjct 2194 CAAGAGTAACCAGCAGAATTTGGGCACCATCAAGTGCTCTAATCTGTGCTGTGAGATCGT 2253 Query 19903 GGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGAC 19962 ||| || || ||||| || ||||||||||| ||||||||| |||||| | Sbjct 2254 CGAGTACTCTTCCCCCGACGAAGTGGCTGTGTGTAATCTTGCGTCCCTGGCCCTGCCTAA 2313 Query 19963 TTTCGTCAAG---------------GCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGT 20007 | ||||||| | | || |||||||||| || | | ||||| Sbjct 2314 GTACGTCAAGACCGACGGAGCAAACGGCCCCGAGTTCGACTTTGTGAAGCTCGAGGAGGT 2373 Query 20008 GACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GAC 20064 ||| | | | |||||| ||||| || ||||||| |||| |||||| | | Sbjct 2374 CACCAGAATAGCCACGCGCAATCTAAACAAAATCATCGACGTCAACTATTACCCTGTGCC 2433 Query 20065 CGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCT 20124 || || | | ||| || | ||||||||| || |||| | || || || ||||| Sbjct 2434 TGAAGCTGAG---AAGAGTAACAAGCGCCACCGACCTATCGGTCTAGGTGTACAAGGCCT 2490 Query 20125 GGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAA 20184 || |||| ||||| || | |||| ||||||| ||| | || |||| ||| || Sbjct 2491 TGCAGACGCGTTCATCTTGATGCGCCTGCCATTCGATAGCCCCGATGCACGCGTGCTGAA 2550 Query 20185 CAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CCTGGAATCGTGCGAACTCGCC 20242 |||| |||||||||| | | ||| || || | | || | ||||| | ||| Sbjct 2551 CAAGCACATCTTCGAGACTATCTACTACAGTGCGGTGACGGAGAGTATTGCGA--TTGCC 2608 Query 20243 AAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAG 20302 || ||| || || |||||||| | | || || || ||| | |||||||| | ||| Sbjct 2609 AAGAGGGAGGGTCCTTACGAGACCTACGCTGGTTCCCCAGCGAGCAAGGGTATCTTGCAG 2668 Query 20303 CCGGACATGTGGGGCGT----CACTGAGAATGA---GTTTTGG--AGCGCCCTCAAGGTT 20353 || ||||||| || | || || || | || || | | |||||| Sbjct 2669 TTCGATATGTGGGATGTTGTCCCCTCGGATAGACACGATTGGGCTAAGG---TCAAGGAG 2725 Query 20354 GAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCG 20413 || || |||| || | || || | | ||||| || ||||| ||||| Sbjct 2726 GATATGGCTTTATACGGACTCAGAAATTCACTTTTGGTCGCCCCTATGCCTACCGCTAGC 2785 Query 20414 ACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTG 20473 || || ||||| |||| || |||||| | ||||| ||||| | ||||||||| Sbjct 2786 ACAGCTCAGATTCTGGGTAATAACGAGAGCATAGAGCCCTACACATCGAACATCTACACA 2845 Query 20474 CGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTG 20518 |||||| || | || |||||| || || ||| |||| ||| Sbjct 2846 CGTCGTGTGCTCTCAGGAGAGTTCCAGATTGTCAACCAGCATCTG 2890 >seq41229 Length=5014 Score = 114 bits (126), Expect = 1e-20 Identities = 452/692 (65%), Gaps = 47/692 (7%) Strand=Plus/Minus Query 79130 TGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGT 79189 |||||||||| || | || |||||| |||| ||| |||||||||| || ||||| Sbjct 2155 TGATGGTGCCCATATACTCCTGGTTATTCTTGCTGTTGACGGCGTCCTTGAAGACCATGT 2096 Query 79190 ACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGTCCCAGATGTCCCGGGCCCGG 79248 ||||| |||| |||| ||| | ||| || | | | | | ||| |||||| | Sbjct 2095 ACGGCATCCCCGTCTGCGTCTGGGTGCTGATGATCTTCATGACC-ACGTCGCGGGCCGAG 2037 Query 79249 ACAACCTT---CTTGTACCGACCCTGTGCGAC--GTACGTCCG-GTACAACTCGTTGAAA 79302 || ||| | |||| || | || || | |||| || | |||| ||| ||| Sbjct 2036 ACCACCGTGCGCTTGAT--GAACGGGTCCGCCTCGTAC-TCGGCGTACCGTGCGTCGAAC 1980 Query 79303 GCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCC 79362 || |||| | | || | ||| | |||| || ||||| | ||| ||||| | Sbjct 1979 GCGGCCCCGTGCAGGTCCGTGAGGTCGCGGCAGGTGTCGGGGCAGAACAGCGACCAGTTC 1920 Query 79363 TCG---TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGG 79419 || ||||| | || || | ||||| |||||||| | |||||| | ||| ||| Sbjct 1919 GCGCGCTCCTTGGC--CCGTCGC-ATGAACAGGTCCGGCACCCACAGCCCATAGAACAGG 1863 Query 79420 TCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATG 79479 || ||| || || |||||||| || ||| || || || ||| |||||||| Sbjct 1862 TCCCGGGCCCGGATGCTGTCGTCGCCGTGCGGCAGCCGTGCGTCCAGGAAGGCCATGATG 1803 Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539 |||| |||||||||||||| || | || | ||| |||||||| || ||||| ||| Sbjct 1802 TCGGTGTGCCACGGCTCCATGTACACCGCCACCGATCCCTTGCGGTTCCCGCC---CTGA 1746 Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCG-GAGCATGGGCACGA-TGCCGTCGGCGA 79597 | | || |||||| |||| ||| ||||| |||| | | ||| || Sbjct 1745 TCAATGTGAGTAGCCGTGGCATTGAGG-CTCTTGAGCAGCGGCATCACTCCCGAGCTCGT 1687 Query 79598 CGCCGTTCGTCCCGTTGATT------CGTGTACCGCT----CGCCCGAATGTTCGAGCAG 79647 | ||||| || ||| ||| | | ||||| ||||| | ||| ||| Sbjct 1686 C-CCGTTGGTGCCGCGGATCGCCGAGCCGGCACCGCGGATCCGCCCCAC----CGA-CAG 1633 Query 79648 TGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAG 79707 |||||||| |||| || ||||||||| ||||| || ||| | |||||||||||| Sbjct 1632 C-----CCGATGCCGCCGGCCCGCTTGGAGATCTGCGCACAGTCCGTCAGCGTCTCGTAG 1578 Query 79708 ATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTG 79767 |||||| || ||| |||| ||| | | ||||||||| ||||| ||| || | Sbjct 1577 ATGCCCGTGAGCGA---GTCCGCCATGCCCAGCAGGAAGCACGACGACAGCTGCTCGTAG 1521 Query 79768 TTCGTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799 ||||| | |||||| || | ||||| ||| Sbjct 1520 CAGGTACCAGAGTTGAACAGTGCCGGCGACGC 1489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548219785928400