Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq44439 129 6e-25 seq39701 129 6e-25 seq44045 114 1e-20 seq41229 104 3e-17 seq37209 84.2 2e-11 >seq44439 Length=16216 Score = 129 bits (142), Expect = 6e-25 Identities = 196/274 (72%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCA-TCCTTGCCACCTGCCAGCCGCGTTCCAAA 152084 || ||| ||||||| | || ||| || ||| |||||||| || | || || | || || Sbjct 924 CGGGTGTAGATGTACCTGGGGCTCGC-GCAGTCCTTGCCGCCCTCGAGGCGGCTGCCGAA 982 Query 152085 CTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| || || ||| | || || | ||||||||||| |||||| | ||||| |||| Sbjct 983 CTGCCCGGACGGCACCAGCAGCTCGAGGTTGTTGGTGCCCACATAGTTCTGGGCCATGCA 1042 Query 152145 CACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 |||||| ||| ||| ||||| |||||||| || || || |||||||| |||| | Sbjct 1043 CACAATGGTGGAGAACAGGCTCGCCTCACCGTGCTGGTAGGCGGTCTGCTCGGCGACG-C 1101 Query 152205 TCCCGCC-AACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAA 152263 | |||| ||||| || ||||| ||||| | |||||||| |||||| ||| | Sbjct 1102 TGGCGCCGAACTGGGCTACCTTGATGTCGGCGGTCAGGTTGCGCTTGAGCGCCACGTGCA 1161 Query 152264 TCACCTTGCGCTGGGATGGTTTCAAACCGTCCAC 152297 |||||||||||| || || | |||||||| Sbjct 1162 GGACCTTGCGCTGGCCAGGCTTGAGTCCGTCCAC 1195 Score = 123 bits (136), Expect = 3e-23 Identities = 235/341 (69%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 117249 TGAGCACCGCATTGTCACTCGGATC-GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTG 117307 ||||||| || | ||| |||| | ||| ||| | | ||||| || || ||||| ||| Sbjct 871 TGAGCACGGCGTCGTC-CTCGACCCTGAAGATGGCCCTTGTCCAGGGCGCGAGGCGGGTG 929 Query 117308 AAAATGTAACGAGAGCTTGCAGCA-TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCC 117366 | ||||| | | ||| || ||| |||||||| || | || || | ||||| || || Sbjct 930 TAGATGTACCTGGGGCTCGC-GCAGTCCTTGCCGCCCTCGAGGCGGCTGCCGAACTGCCC 988 Query 117367 ACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAAT 117426 |||| ||| || | |||||||||| ||||||| |||| || |||| | ||||| Sbjct 989 GGACGGCACCAGCAGCTCGAGGTTGTTGGTGCCCACATAGTTCTGGGCCATGCACACAAT 1048 Query 117427 CGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGC 117486 || |||||||||||||| || || || || |||||||| || ||| | | | Sbjct 1049 GGTGGAGAACAGGCTCGCCTCACCGTGCTGGTAGGCGGTCTGCTCGGCGACGCTGGCGCC 1108 Query 117487 CAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTT 117546 | ||| || ||||| ||||| | |||||||| |||||| | | | ||||| Sbjct 1109 GAACTGGGCTACCTTGATGTCGGCGGTCAGGTTGCGCTTGAGCGCCACGTGCAGGACCTT 1168 Query 117547 GCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCG 117587 |||||| | ||||| || || ||| | | | ||||||| Sbjct 1169 GCGCTGGCCAGGCTTGAGTCCGTCCACAAGGGATGGGATCG 1209 >seq39701 Length=4095 Score = 129 bits (142), Expect = 6e-25 Identities = 357/535 (67%), Gaps = 27/535 (5%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| ||||| ||||| || || | || |||||||| || ||||||||| Sbjct 2752 CCCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAGTCCAGGCATTAGCCCACGCTTC 2693 Query 74829 TTCAACCAAAAGAT---GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCA 74885 |||| ||||||||| |||| ||||| ||| ||| ||||| || || || || Sbjct 2692 TTCATCCAAAAGATCGAGGCA---AAGGAGCCAGAGAAAAAGATACCCTCTACTGCAGCG 2636 Query 74886 AAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGTCTGAGCCCAT 74942 ||||| || | || | |||| | |||||| | ||||| | | ||||| Sbjct 2635 AAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTCGTTGATCCACTTGAGGGCCCAG 2576 Query 74943 TCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT 75002 || || ||| ||||| ||||||| || || || || | || ||| | ||||||| Sbjct 2575 TCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGCGTTAAATAGGTTATCCTTCTCA 2516 Query 75003 TCGGGATCCTTGACGAGCTTGTCAATC-ATAAG---TGAGTACGTCTCCGAATGAATCGA 75058 ||| || || | |||| || ||||| |||||| |||| || || || Sbjct 2515 CGGGGGTCACGGA--TGTATGTC--TCGATAAGCGTGGAGTACATCTCAGAGTGGATGTT 2460 Query 75059 CTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT--CCTT 75115 ||| || ||| |||| | ||||||| | || ||||| || || ||||| | || Sbjct 2459 CTCAATG-GCGATCTGGAATCCGTAGAAGCAACGTGCCTCGGCGATTTGTACTTCACCGC 2401 Query 75116 TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175 |||| || | || |||||| | || || || || ||| ||||| ||||||| Sbjct 2400 TGAAGCGCTC--GAGGAGATTCTCGTTCACAATACCATCACTGGCAGCGAAGAAAGCCA- 2344 Query 75176 TACCATTTTGATA--AAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 || | |||| ||||||||||| | || | || || ||||| || || || Sbjct 2343 -ACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCCAGTCAGCTAGATCA 2285 Query 75234 CCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 | | || ||||| |||||| || ||||||||| | |||||| ||||||| Sbjct 2284 CGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCTTCTTGTACA 2230 >seq44045 Length=9771 Score = 114 bits (126), Expect = 1e-20 Identities = 450/689 (65%), Gaps = 18/689 (3%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 ||||| ||||| | || |||||||||||||| || || | | || ||| | || Sbjct 1547 TTTACACACGCTTCACCTACCCTGTTCAACGCCGGCACAAGACGTCCCCAGCTATCATCG 1606 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 || ||||| | | || |||| ||||| || || || |||||| | || || ||| Sbjct 1607 TGTTTCCTTCTCACAATCGAGGACGACTCCATTGAAGGTATCTACAACACCCTGAAGACC 1666 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG-TCCGTGC 53451 || || ||||||||| | | || |||||||| || || | || | | || | | Sbjct 1667 TGCGCGATGATCTCCAAGAGTGCCGGAGGTATCGGACTCAAC-GTTCACAAGATCAGATC 1725 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511 || | | ||| || || || || | | | ||| | ||||||||||| || Sbjct 1726 CAAAGAAAGCTACATCGCTGGAACCAATGGAAACTCTAACGGACTTGTGCCTATGCTGCG 1785 Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTT 53571 || ||||||||||| || || ||||| |||| |||||| ||||| || | || Sbjct 1786 TGTATTCAACAACACCGCACGCTACGTTGACCAAGGTGGTAACAAGCGTCCTGGAGCATT 1845 Query 53572 CGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAA 53631 || || ||||| ||||| |||||||| || || | ||||| || || || ||| Sbjct 1846 TGCAATGTACCTAGAGCCCTGGCACGCAGATATCTTTGAGTTCCTGGATCTAAAGAAGAA 1905 Query 53632 -TCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGAC 53689 |||| | | || ||||||||| ||||| || || | | || |||||||| || Sbjct 1906 CACAGGTTCA-GAGGAGATGCGCGCACGTGATCTTTTCTTCGGC-CTGTGGATCAACGAT 1963 Query 53690 CTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 || || ||| || ||| | |||| |||| |||||| ||| | | || | || | Sbjct 1964 CTATTTATG-GAACGGT-GCGAAGCCGACGGAGAGTGGAGTCTGTTCTCACCAAGTGA-T 2020 Query 53748 GC-CCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCA 53806 || || ||| | | | ||||| || |||||||| | || | || | | ||||| | Sbjct 2021 GCACCAGGCTTGGACGATGTCTGGGGAAAGGAGTTTGAAGATCTATACCACAAGTACG-A 2079 Query 53807 GTTC-AGGG--CCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 | | |||| |||| || || ||||||| | || | ||| || || || Sbjct 2080 GCGCGAGGGTAGAGCTAAGCGAGTAA--TCAAGGCACAGCAGCTGTGGTTCGCCATTCTA 2137 Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 || ||| ||||| || || || |||||| ||||||||| || |||| ||| Sbjct 2138 GAGGCGCAGACCGAGACCGGCACACCATACATGCTGTACAAGGATGCGTGCAACCGCAAG 2197 Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAA 53952 || |||||| |||| | ||| |||||| Sbjct 2198 AGTAACCAGCAGAATTTGGGCACCATCAA 2226 >seq41229 Length=5014 Score = 104 bits (114), Expect = 3e-17 Identities = 438/676 (65%), Gaps = 23/676 (3%) Strand=Plus/Plus Query 53286 CGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGG 53345 |||| | ||||||||| ||||||| || ||| ||||| ||||||||| ||| Sbjct 1493 CGCCGGCACTGTTCAACTCTGGTACCTGCTACGAGCAGCTGTCGTCGTGCTTCCTGCTGG 1552 Query 53346 CGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCT 53405 ||| ||| |||| || ||||||||||||||||| | ||| ||||| || |||| Sbjct 1553 GCATGGCGGA---CTCGCTCACGGGCATCTACGAGACGCTGACGGACTGTGCGCAGATCT 1609 Query 53406 CCAAGTGGTCGGGTGGTATCGG--TATCCACTGCTCGAACGTCCGTGCGAACGGCACACC 53463 ||||| || | || || ||||| | || | || | |||| | |||| | | Sbjct 1610 CCAAGCGGGCCGGCGGCATCGGGCTGTCGGTGGGGCGGA--TCCGCGGTGCCGGCTCGGC 1667 Query 53464 AATCAAGGGGACGAACGGCGTCG-CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACA 53522 ||| || || ||||| | || | ||| | |||| ||||| | |||| Sbjct 1668 GATCCGCGGCACCAACGG-GACGAGCTCGGGAGTGATGCCGCTGCTCAAGAGCCTCAATG 1726 Query 53523 ACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACC 53582 |||||| || | | ||| || ||||| |||||||| ||| | || | ||| Sbjct 1727 CCACGGCTACTCACATTGATCAG---GGCGGGAACCGCAAGGGATCGGTGGCGGTGTACA 1783 Query 53583 TCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACG 53642 | |||||||||||| ||||||| |||| || || || || ||| || || |||| Sbjct 1784 TGGAGCCGTGGCACACCGACATCATGGCCTTCCTGGACGCACGGCTGCCGCACGGCGACG 1843 Query 53643 AAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702 | || || ||| |||||||| | |||||| | |||||||| ||||||| | Sbjct 1844 ACAGCATCCGGGCCCGGGACCTGTTCTATGGGCTGTGGGTGCCGGACCTGTTCATGCGAC 1903 Query 53703 AGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGG 53762 || || || || | | |||| ||| | ||||| || |||| || |||| || Sbjct 1904 GGGCCAAGGAGCGCGCGAACTGGTCGCTGTTCTGCCCCGACACCTGCCGCGACCTCACGG 1963 Query 53763 GTGTCTACGGTGAGGAGTTTAACGAGATGTA-TCGGACGTACGCAGTTCAGGGCCG--CT 53819 | |||| | | ||| ||| ||| | || ||||| || | | ||| | Sbjct 1964 ACCTGCACGGGGCCGCGTTCGACGCACGGTACGCCGA-GTACG-AG-GCGGACCCGTTCA 2020 Query 53820 ACAAG---AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCA-ATCCTCAAGAGCCAGGTG 53875 |||| | | |||| ||| || || || | ||| | ||| ||| | |||| | Sbjct 2021 TCAAGCGCACGGTGGTCTCGGCCCGCGACGT-GGTCATGAAGATCATCAGCACCCAGACG 2079 Query 53876 GAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAG 53935 ||||||| | |||||||||| || |||||| | |||||| |||| |||||| || Sbjct 2080 CAGACGGGGATGCCGTACATGGTCTTCAAGGACGCCGTCAACAGCAAGAATAACCAGGAG 2139 Query 53936 AACATCGGCGTCATCA 53951 | || ||| ||||| Sbjct 2140 TATATGGGCACCATCA 2155 >seq37209 Length=3165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 175/255 (69%), Gaps = 23/255 (9%) Strand=Plus/Minus Query 124512 GTCTCACCCGTGCCAATCACGAAATCTTCGGGAA--TCGACTGCTGCAACATAAGCCACA 124569 |||||||| ||| | || ||||| |||| || ||| | ||| | || ||||| Sbjct 2321 GTCTCACCGGTGGCGCATACAAAATCGTCGGCAACATCGGC--CTGTAGAATCCTCCACA 2264 Query 124570 TGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCT 124629 | || | |||||||| ||||| ||||| || |||||||| |||| |||||| || | Sbjct 2263 TAGCCTCTACGTAGTCACGGGCGTGACCCCAATCACGCTTGGCGTCCATGTTTCCTAGGT 2204 Query 124630 CGATTGGC-------TTGGCCGT-CTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCG 124681 || ||| || ||||| |||| || | |||| | | ||||||||||| Sbjct 2203 --ATAGGCAGTCCTGTTTGCCGTACTTGATC---TGGGCCACGGCGCGGGTAATCTTGCG 2149 Query 124682 CGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACA 124738 ||| || || ||| || || || |||||||||||||||||| || || | || Sbjct 2148 CGTGACGAAGGTCTCT---CCACGACGGGGAGACTCGTGGTTGAACAGGATACCGTTGCA 2092 Query 124739 CGCAAACATCCCGTA 124753 |||||||| ||||| Sbjct 2091 GGCAAACATGCCGTA 2077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546911713703000