Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq44045 196 5e-45 seq37552 179 4e-40 seq27769 176 5e-39 seq753 176 5e-39 seq44439 122 1e-22 seq30531 111 2e-19 seq37601 100 3e-16 seq38696 95.1 1e-14 >seq44045 Length=9771 Score = 196 bits (216), Expect = 5e-45 Identities = 525/800 (66%), Gaps = 26/800 (3%) Strand=Plus/Minus Query 80323 AGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA 80382 || || |||| || |||| ||| | || |||||||| | ||| ||||| Sbjct 2901 AGGTCCTTCAGCAGATGCTGGTTGACAATCTGGAACTCTCCTGAGAGCACACGACGTGTG 2842 Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGC-CTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| | ||| |||||| || || || |||||||| ||||| Sbjct 2841 TAGATGTTCGATGTGTAGGGCTCTA-TGCTCTCGTTATTACCCAGAATCTGAGCTGTGCT 2783 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| ||| ||||||| |||||||| | || |||| |||||||| Sbjct 2782 AGCGGTAGGCATAGGGGCGACCAAAAGTGAATTTCTGAGTCCGTATAAAGCCATATCCTC 2723 Query 80502 GCGCAAATCTGACCAAAAATCAACCCCAAC-GCTGTGAC-----CCCACATGTCGTGCTG 80555 | | | |||| || | | | | | ||| ||||||| ||| ||| Sbjct 2722 CTTGACCTTAGCCCAA---TCGTGTCTATCCGAGGGGACAACATCCCACATATCGAACTG 2666 Query 80556 CAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGC 80615 |||||| |||| ||| || || || ||| | |||||||| || |||||| ||||||| Sbjct 2665 CAAGATACCCTTGCTCGCTGGGGAACCAGCGTAGGTCTCGTAAGGACCCTCCCTCTTGGC 2606 Query 80616 CAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCAC 80675 | | || |||| | | || || || || ||| |||| | |||||||| Sbjct 2605 AATCGCAATACTCTCCGTCACCGCACTGTAGTAGATAGTCTCGAAGATGTGCTTGTTCAG 2546 Query 80676 ACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCC 80735 |||| || | ||| ||||| | || || ||||| |||||| |||| || ||||| Sbjct 2545 CACGCGTGCATCGGGGCTATCGAATGGCAGGCGCATCAAGATGAACGCGTCTGCAAGGCC 2486 Query 80736 CTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGG 80795 || || || | |||| || |||||||||||||| ||| || || || | || Sbjct 2485 TTGTACACCTAGACCGATAGGTCGGTGGCGCTTGTTACTCTTCTCAGCTTCAGGCACAGG 2426 Query 80796 GTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATG 80855 |||| |||| ||||||| ||| || ||||| || | | | || || || | Sbjct 2425 GTAATAGTTGACGTCGATGATTTTGTTTAGATTGCGCGTGGCTATTCTGGTGACCTCCTC 2366 Query 80856 AAGTTTCTGAAAGTCGAA----------TTGGTTCC-----CCTTCACAAATGCCGGAAG 80900 || ||| ||||||||| || | ||| ||| || | || || Sbjct 2365 GAGCTTCACAAAGTCGAACTCGGGGCCGTTTGCTCCGTCGGTCTTGACGTACTTAGGCAG 2306 Query 80901 GCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTC 80960 | ||||||||| ||||| ||||| ||||| || || | | |||||||||| || Sbjct 2305 GGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGGGAAGAGTACTCGACGATCTC 2246 Query 80961 CGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020 ||||| |||||| |||| || || |||| || | |||||| |||| |||||| Sbjct 2245 ACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTTACTCTTGCGGTTGCA 2186 Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080 || |||||||| |||||| || || ||||||||| ||| | || || |||||| Sbjct 2185 CGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGCCTCTAGAATGGCGAA 2126 Query 81081 CCAAATCTCGCGCGCCTTGA 81100 ||| | || | ||||||| Sbjct 2125 CCACAGCTGCTGTGCCTTGA 2106 >seq37552 Length=3269 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || | || || || || || Sbjct 3246 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCTTGGATGTCGAATCGAGT 3187 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| |||||||||| |||||||| |||||||| || || || || ||| Sbjct 3186 GATACCATCGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCCCCTGATCAG 3127 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| |||||||| || |||| |||||||| || || || || Sbjct 3126 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGAAGATGGACGTACCCTGGCCGATTACAAC 3067 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || |||||||| || || |||||||| ||||| || Sbjct 3066 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGTCTCCGCGGAGG 3020 >seq27769 Length=1647 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || |||||||| || || || || ||||| || Sbjct 1005 ATGCAAATTTTTGTGAAGACACTAACTGGAAAGACTATCACCCTCGATGTGGAGTCCAGT 946 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||| || || || |||||||| ||||| || || || ||| Sbjct 945 GATACGATTGATAATGTGAAGGCCAAGATACAAGACAAGGAAGGAATCCCCCCCGATCAG 886 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||||||||| || || || |||| || || || || ||||||||| Sbjct 885 CAGCGACTGATCTTTGCTGGTAAACAGCTTGAAGATGGCCGCACACTTGCTGACTATAAT 826 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || ||||||||||| || || ||| | || ||||| Sbjct 825 ATACAGAAAGAGTCAACTCTTCATCTCGTTTTACGTTTGCGAGGTGG 779 Score = 145 bits (160), Expect = 9e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||||||||| || || |||||||| || | || || ||||| || Sbjct 777 ATGCAGATATTCGTCAAGACGCTCACTGGTAAGACTATCACGTTGGATGTCGAGTCTAGT 718 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||| | |||||| || || ||||| || || || ||||| ||| Sbjct 717 GATACTATAGATAATGTGAAAGTTAAAATACAAGATAAGGAAGGCATACCACCAGATCAG 658 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| ||||| || || ||||| ||| | ||||| | ||||| | || || ||||| Sbjct 657 CAGCGACTAATCTTCGCAGGTAAACAATTAGAGGACGGCCGTACTTTGGCTGATTATAAC 598 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| |||||| | || |||| ||| Sbjct 597 ATCCAAAAGGAGTCCACTTTGCACTTAGTTTTG 565 >seq753 Length=412 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || || || ||||| || | Sbjct 389 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCCTGGATGTTGAATCTAGC 330 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||||||||| ||||| |||||||| || ||||| || ||| Sbjct 329 GATACTATCGATAATGTGAAGGCTAAAATCCAGGATAAGGAGGGTATCCCTCCTGATCAG 270 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| ||||||||||||| ||||| | || |||| ||||| ||||| ||||| ||| Sbjct 269 CAGCGTTTAATTTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTAGCCGACTACAAT 210 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || ||| | || | || || || ||||| Sbjct 209 ATTCAGAAGGAGTCAACACTGCATTTGGTTCTTCGACTGCGTGGTGG 163 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || ||||| || ||||||||||| ||||| || || | Sbjct 161 ATGCAGATCTTTGTTAAAACTCTTACTGGTAAGACTATTACGCTTGATGTAGAAAGCAGC 102 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||||| || |||||||| ||||| || || ||||| || ||| Sbjct 101 GATACAATTGATAACGTCAAGGCGAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCAG 42 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCG 27566 ||||| || || ||||| || ||||| || ||||||| ||| Sbjct 41 CAGCGCCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCG 1 >seq44439 Length=16216 Score = 122 bits (134), Expect = 1e-22 Identities = 216/309 (70%), Gaps = 6/309 (2%) Strand=Plus/Minus Query 31962 GCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGC 32021 |||| | || ||| | | | |||||| ||||||||| ||||||||||| | ||| Sbjct 1214 GCGGGCGATCCCATCCCTTGTGGACGGACTCAAGCCTGGCCAGCGCAAGGTCCTGCACGT 1155 Query 32022 CTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGG-GCTA-CGTG 32079 |||||| |||||| | ||||| ||||| || ||| |||| || | ||| Sbjct 1154 GGCGCTCAAGCGCAACCTGACCGCCGACATCAAGGTAGCCCAG--TTCGGCGCCAGCGTC 1097 Query 32080 GCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTT 32139 || ||||| || ||||| || ||||| |||||| || ||||||||| | | Sbjct 1096 GCCGAGCAGACCGCCTACCAGCACGGTGAGGCGAGCCTGTTCTCCACCATTGTGTGCATG 1037 Query 32140 GCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGG 32199 || ||||||| ||| || | || ||||| | | || | ||| || || ||||| || Sbjct 1036 GCCCAGAACTATGTGGGCACCAACAACCTCGAGCTGCTGGTGCCGTCCGGGCAGTTCGGC 977 Query 32200 ACCCGGCTCGCCGGTGGCAAGGA-TGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGC 32258 | ||| |||| || |||||||| ||| |||||| || | ||||||| |||||| ||||| Sbjct 976 AGCCGCCTCGAGGGCGGCAAGGACTGC-GCGAGCCCCAGGTACATCTACACCCGCCTCGC 918 Query 32259 ACCTTCGAC 32267 || | ||| Sbjct 917 GCCCTGGAC 909 >seq30531 Length=1940 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||| || || ||||||||||| || ||||| |||||||| | ||||||| || Sbjct 675 GGAATTCCCCCTGATCAGCAGCGTCTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGC 734 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 |||||||| ||||| || |||| |||||||| || | ||||| || ||||||| || Sbjct 735 ACCCTAGCGGACTACAACATCCAGAAGGAATCTACCTTGCATCTGGTACTGCGTCTACGA 794 Query 27628 GGTGGA 27633 |||||| Sbjct 795 GGTGGA 800 >seq37601 Length=3285 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || || ||||||||||| || || || |||||||| || || |||| || Sbjct 2314 GGTATCCCCCCTGATCAGCAGCGTCTTATCTTCGCCGGTAAGCAGCTGGAAGATGGACGC 2373 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || ||||| |||||||| |||| ||||| ||||| ||||| || || | |||||||| Sbjct 2374 ACACTAGCCGACTATAACATCCAGAAGGAGTCCACCCTTCACCTGGTTCTTCGTCTTCGT 2433 Query 27628 GGTGG 27632 ||||| Sbjct 2434 GGTGG 2438 >seq38696 Length=3654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||| | ||| | |||||| ||||||||||||| | ||| | || ||| | | Sbjct 1553 ATGCAATTGTTTATAAAGACGATTACCGGCAAGACCACATGTCTGGTAGTGGAGCCTGTG 1612 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || ||| |||| || |||||||| ||||| |||||| Sbjct 1613 GACACCATTGTCAACATAAAAGCAAAAGTTCACGAGAAGGAGGGCATTCCCTTCGACCAG 1672 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || | ||| ||||| || || | || || ||||| | || |||||| Sbjct 1673 CAACGCCTCATCTACAGTGGAAAGCAGCTGGAAAACGACCGAACCCTTTCGGATTATAAT 1732 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | || | ||| | || || ||| |||| || || ||||| Sbjct 1733 ATCCAGGACAAAGCGACTGTGCACCTGGTCCTGCGGCTACGTGGTGG 1779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569993271773200