Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq27769 107 1e-18 seq37552 86.0 4e-12 >seq27769 Length=1647 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||| || || | ||| ||||| ||| || || || ||||| || | | Sbjct 779 CCACCTCGCAAACGTAAAACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCA 838 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | |||||||| |||||||| ||||| || | ||||| || || || || Sbjct 839 AGTGTGCGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGG 898 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||||| | || || || ||| || || | |||||| Sbjct 899 ATTCCTTCCTTGTCTTGTATCTTG-GCCTTCACATTATCAATCGTATCACTGGACTCCAC 957 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||| || || || || |||| || ||||||||||| |||||||| Sbjct 958 ATCGAGGGTGATAGTCTTTCCAGTTAGTGTCTTCACAAAAATTTGCATGTT 1008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/234 (68%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | | ||| || || || | |||| ||||||||| ||||||||||| | Sbjct 551 CCGCCTCTTAATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCC 610 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| || | ||||||||| || || |||| ||||| || || || || Sbjct 611 AAAGTACGGCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGT 670 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT----TCGCT--- 34652 | || ||||| ||||| | ||||||| | | ||| | | | || || Sbjct 671 ATGCCTTCCTT-------ATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGA 723 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || |||| || || || ||||| || | ||| || || || |||||||| Sbjct 724 CTCGACATCCAACGTGATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 >seq37552 Length=3269 Score = 86.0 bits (94), Expect = 4e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | || ||||| |||||| |||||||| ||||| | || || || Sbjct 3029 AGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTACGT 3088 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || || || || || |||||||| || || || || | |||||| Sbjct 3089 CCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCCTCC 3148 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 || || ||| || | || || || || || || ||| | || || |||| || Sbjct 3149 TTATC-CTGAATCTTAGCCTTCACATTATCGATGGTATCACTCGAT-TCGACATCCAAGG 3206 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | || || ||||| |||||||| Sbjct 3207 TGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314558965905005