Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq37552 165 2e-35 seq27769 140 8e-28 seq753 132 1e-25 seq37601 111 4e-19 seq38696 84.2 5e-11 >seq37552 Length=3269 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||||||||| ||||| || || ||||| ||||| || ||||| | |||||||||| Sbjct 3038 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTACGTCCATCTTCC 3097 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || ||||| || |||||||| | || || || ||||| || | || ||||| ||||| Sbjct 3098 AGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGA 3157 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||||| || |||||||| ||| ||| || || | ||||| |||||| Sbjct 3158 ATCTTAGCCTTCACATTATCGATGGTATCACTCGATTCGACATCCAAGGTGATTGTCTTT 3217 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| ||||| | |||||| Sbjct 3218 CCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq27769 Length=1647 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || |||||||| |||||||| || || ||||| || ||||| || | |||||||| Sbjct 797 ACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCA 856 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||| || || || ||||| || || || || || || || | |||||||||||| || Sbjct 857 AGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGT 916 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||||| || || || || ||| | || || ||||| ||||| |||||| Sbjct 917 ATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTT 976 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| ||||| | ||||| || Sbjct 977 CCAGTTAGTGTCTTCACAAAAATTTGCATGTT 1008 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | ||||||||| ||||||||||||||||| || | || | || || || | || Sbjct 574 GTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCTAATTG 633 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || ||||||||||| || || || || || || || | |||||||| || || || || Sbjct 634 TTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTCCTTATCTTGTATTTT 693 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||| || || || || ||| || || || | ||||| ||||| || || Sbjct 694 AACTTTCACATTATCTATAGTATCACTAGACTCGACATCCAACGTGATAGTCTTACCAGT 753 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | |||||| Sbjct 754 GAGCGTCTTGACGAATATCTGCAT 777 >seq753 Length=412 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || | || || || ||||| || || || || || || || || || Sbjct 168 ACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCTAGTGT 227 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| |||||| || || || || | || || || |||||||| | || Sbjct 228 ACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGGATACC 287 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTC 211069 ||||| |||||||| || ||||| || ||||| || || ||| |||||| || Sbjct 288 CTCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGA---TTCAACATC 344 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| ||||||||||| ||||| | |||||| Sbjct 345 CAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 >seq37601 Length=3285 Score = 111 bits (122), Expect = 4e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || |||||||| |||||||| || ||||||||||| || || || || Sbjct 2433 ACGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGCTAGTGT 2374 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | |||||||||||||||||| || ||||||||||| || || || ||||| || Sbjct 2373 GCGTCCATCTTCCAGCTGCTTACCGGCGAAGATAAGACGCTGCTGATCAGGGGG 2320 >seq38696 Length=3654 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| | ||| | | | ||||| |||||||||| |||||| | | | | Sbjct 1764 AGGACCAGGTGCACAGTCGCTTTGTCCTGGATATTATAATCCGAAAGGGTTCGGTCGTTT 1705 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || | |||| |||||||| ||||| |||| || ||||| || Sbjct 1704 TCCAGCTGCTTTCCACTGTAGATGAGGCGTTGCTGGTCGAAGGGAATGCCCTCCTTCTCG 1645 Query 211023 TGGATCTTTTG-TTTCACGTTTTCGATGGTGT-CAGAGCTTTCAACCTCGAGAGTGATCG 211080 | || |||||| ||| | ||| | ||||||| || || || || | ||| | | Sbjct 1644 T-GAACTTTTGCTTTTATGTTGACAATGGTGTCCACAG-GCTCCACTACCAGACATGTGG 1587 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || || | ||||||| ||||| ||||| Sbjct 1586 TCTTGCCGGTAATCGTCTTTATAAACAATTGCAT 1553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158491325017025