Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq753 113 3e-20 seq37552 89.7 3e-13 >seq753 Length=412 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| ||||| || ||||| || || ||||| || | Sbjct 389 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCCTGGATGTTGAATCTAGC 330 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | || | |||| | || || || ||| | || || ||||| Sbjct 329 GATACTATCGATAATGTGAAGGCTAAAA-TCCAGGATAAGGAGGGTATCCCTCCTGATCA 271 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||||| ||||| || || || ||||||| | ||| || ||| ||| ||||| Sbjct 270 GCAGCGTTTAATTTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTAGCCGACTACAA 211 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| ||| | ||||| ||| Sbjct 210 TATTCAGAAGGAGTCAACACTGCATTTGGTT 180 >seq37552 Length=3269 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| ||||| || ||||| | || || || || | Sbjct 3246 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCTTGGATGTCGAATCGAGT 3187 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | || || || || || | || || ||||| Sbjct 3186 GATACCATCGATAATGTGAAGGCTAAGA-TTCAGGATAAGGAGGGCATCCCCCCTGATCA 3128 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || || || ||||||||||| | ||| || | | ||||||||| Sbjct 3127 GCAGCGTTTGATCTTCGCTGGAAAGCAACTGGAAGATGGACGTACCCTGGCCGATTACAA 3068 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3067 CATTCAGAAGGAGTCTAC 3050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337826344398380