Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq37552 116 9e-21 seq27769 113 1e-19 seq8825 107 5e-18 seq37601 84.2 5e-11 seq13305 84.2 5e-11 >seq37552 Length=3269 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||||||| ||||| || || || || | ||||||||||||| || | |||||||| Sbjct 3038 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTACGTCCATCTTCC 3097 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || ||||| ||||||||||| | || || || || || || || || ||||| || || Sbjct 3098 AGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGA 3157 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||||||| |||||||| || | ||| || || || ||||| ||||| Sbjct 3158 ATCTTAGCCTTCACATTATCGATGGTATCACTCGATTCGACATCCAAGGTGATTGTCTTT 3217 Query 225685 CCCGTCAAAGTTTT 225698 || || | ||| || Sbjct 3218 CCAGTGAGAGTCTT 3231 >seq27769 Length=1647 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || || || ||||| || ||||| || | ||| || || || | || | |||||||| Sbjct 797 ACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCA 856 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 ||||| || ||||| ||||| ||||| || || ||||| || || |||||||||||||| Sbjct 857 AGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGT 916 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||||||| || || || || || ||||| || | ||||| ||||| Sbjct 917 ATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTT 976 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || | || || | || | |||||| || Sbjct 977 CCAGTTAGTGTCTTCACAAAAATTTGCATGTT 1008 >seq8825 Length=604 Score = 107 bits (118), Expect = 5e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || ||||| || |||| |||||||| ||| | ||||| || || | |||||||| ||| Sbjct 399 TATAACGTGATAGTTACTGCGCATGCATTTTTGATGATATTTTTCATGGTTATGCCAGTT 458 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | || || ||||| ||||||| || | || || | || || |||||||||||| Sbjct 459 TTAATTGGAGGTTTTGGAAATTATTTTTTACCACTATTAATAGGAAGTCCTGATATGGCC 518 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 ||||||||| | || ||||| |||||| || |||| |||||| | || ||| Sbjct 519 TTTCCAAGGTTAAATAATATCTCCTTTTGACTATTACCACCTTCCATTTTACTA 572 >seq37601 Length=3285 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || ||||| || || |||| || || ||||| | || Sbjct 2433 ACGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGCTAGTGT 2374 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || ||||||||||| || || || || || || ||||| Sbjct 2373 GCGTCCATCTTCCAGCTGCTTACCGGCGAAGATAAGACGCTGCTGATCAGGGGGGATACC 2314 Query 225612 T 225612 | Sbjct 2313 T 2313 >seq13305 Length=761 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||||||||||| |||| ||| ||||||||| | | ||||||||||| Sbjct 168 AAAGGTAATTTATGCATTTCTAAATGAGGAGATCTCATATTTATCACAGTAGTAATAAAA 227 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 ||||| || || | | |||||||| || || | ||||||||||| ||||| || || Sbjct 228 TTTATCGCCCCCATTAATGAAGATATTCCCGCTAAGTGTAAACTAAAAATTGCCAAGTCT 287 Query 371485 ACGGAACCGCC 371495 || || || || Sbjct 288 ACTGACCCACC 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191851500072590