Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq39701 232 6e-56 >seq39701 Length=4095 Score = 232 bits (256), Expect = 6e-56 Identities = 379/546 (69%), Gaps = 0/546 (0%) Strand=Plus/Minus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| ||||| ||||| || | || || |||||||| |||| || || || || |||| Sbjct 2774 ACAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAG 2715 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 ||| ||||||| || | ||| || | |||||| || | |||||| || ||||| || || Sbjct 2714 TCCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAAAAA 2655 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || || ||||| || || || ||||| | || ||||| | ||| | ||| || Sbjct 2654 GATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTCGTT 2595 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||| || | ||||||| || |||||||| ||| || | ||| | |||||||| Sbjct 2594 GATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGCGTT 2535 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 ||||| ||| || ||| ||||| | || || || || || || | ||||| Sbjct 2534 AAATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGATAAGCGTGGAGTACAT 2475 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 ||||| || || || || || || ||||| |||||||| ||||| | || || | | Sbjct 2474 CTCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGGCGAT 2415 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 ||| ||||| | || | || | | || ||||| || ||||| |||||||| || Sbjct 2414 TTGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGGCAGC 2355 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 || || ||||| ||||| |||| |||| | ||| || |||||| || | ||||| Sbjct 2354 GAAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCCAGTC 2295 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | | ||| || | |||||| || ||||||||||| || || || ||||| || || Sbjct 2294 AGCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCTTCTT 2235 Query 5087 GTACAT 5092 |||||| Sbjct 2234 GTACAT 2229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426818070388505