Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq44045 159 5e-34 >seq44045 Length=9771 Score = 159 bits (176), Expect = 5e-34 Identities = 695/1084 (64%), Gaps = 14/1084 (1%) Strand=Plus/Minus Query 77742 CATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAG 77801 || |||||| || ||||| ||||||| ||| || ||||| ||||| ||||| | Sbjct 2241 CACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCA 2182 Query 77802 TCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAG 77861 ||||| || || || | || || ||||| || |||| | || | ||| | ||| Sbjct 2181 TCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCAC 2122 Query 77862 A-CGACTCTAGCTTTTATCA-TAGATTTGTATCGCCTCTCTCTTTCATA-TTGAGTATAT 77918 | | || | || || || | | | || | || | ||| | || || ||| | ||| Sbjct 2121 AGCTGCTGT-GCCTTGATTACTCGCTTAGC-TCTACCCTCGCGCTCGTACTTGTGG-TAT 2065 Query 77919 AGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG-GCATTCATTTGGGCACAT 77977 || |||||| || | |||||| ||||| ||||| || || |||| || |||| | | Sbjct 2064 AGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAGCCTGGTGCAT-CACTTGGTGAGAA 2006 Query 77978 CAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGC 78037 || ||| || || || | | |||| |||||| ||||| ||||| || | Sbjct 2005 CAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAATAGATCGTTGATCCACAGGCC 1946 Query 78038 AATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAA 78097 | || ||||| || | | || || ||||| ||||| || ||||| || || Sbjct 1945 GAAGAAAAGATCACGTGCGCGCATCTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAA 1886 Query 78098 CTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATT 78157 ||| | ||||| | ||||| || ||||| || ||||| | ||||||| || || || Sbjct 1885 CTCAAAGATATCTGCGTGCCAGGGCTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTT 1826 Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || || || | || | |||||||| || | || | || ||| || | || || Sbjct 1825 ACCACCTTGGTCAACGTAGCGTGCGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCC 1766 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 |||||| ||||||| ||||||| || || ||| | | | | || || || | Sbjct 1765 GTTAGAGTTTCCATTGGTTCCAGCGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTT 1706 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || |||| || || | ||||| |||| || | |||||| Sbjct 1705 GAGTCCGATACCTCCGGCACTCTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGAT 1646 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 78397 ||| || || ||| ||| || | ||||| ||||| || | || || | Sbjct 1645 ACCTTCAATGGAGTCGTCCTCGATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCT 1586 Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 || || || || || | || || || || || |||||||| | || || || Sbjct 1585 TGTGCCGGCGTTGAACAGGGTAGGTGAAGCGTGTGTAAACCAACCCTGTGATAGGTTGTT 1526 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||||||||||| || ||||| ||| || || || |||||||| | Sbjct 1525 GTATGTTTCAATAGCCCCATCGATGTCGTCGCCATGGATACCCACACTCACACGCATAAG 1466 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||||| ||| | || | | || || ||| ||| | || || Sbjct 1465 CATGTGCTGAGGTCGCTCAGCAACTTTTCCGTCCAGACGCAGCAGGTAGGATCTCTCTAA 1406 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAG 78637 ||||| || || || || | ||| |||||| | ||||||| ||| | || || || Sbjct 1405 TGTTTTGAACCCGAAGTACTGGTAGTTAAAGTCACGATCGTAAACAATCGCCGAGTTGAG 1346 Query 78638 TTTATCTTTGTATTTGGT--AACAATATCCATGACAGTAGT-TGAAATAATAGGAGATCG 78694 || ||| | || | | ||| | |||| | | | || | | |||| | Sbjct 1345 TT--TCTCAGAGTTGGCTCGCACACGCTGGATGA-ACTCCTCGGAGACCAGAGGACTCTG 1289 Query 78695 TACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGttt 78754 | | || || || ||||| ||| || ||||| | ||| || ||||| || | || Sbjct 1288 TTTGTCGTTCTTGGGGTTAACGTAGGTAGCCAAATCATTCATAACCTCACTGAACACCTT 1229 Query 78755 ttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGG 78814 |||||||||||||| ||||| || | || || | ||||| || ||||| || || || Sbjct 1228 CTTTGTTTCCTTGTGCAGATTGGACATCGCAATGCGGGCAGCCAGGATAGCGTAGTCGGG 1169 Query 78815 ATGT 78818 ||| Sbjct 1168 GTGT 1165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694282520730400