Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq37552 107 4e-18 seq27769 105 2e-17 >seq37552 Length=3269 Score = 107 bits (118), Expect = 4e-18 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| |||||||||||||| || || |||||||||||||| | || | |||||||| Sbjct 3038 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTACGTCCATCTTCC 3097 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 || ||||| || |||||||| | | |||||| || | | ||| || ||||| || | Sbjct 3098 AGTTGCTTT--CCAGCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCCTCCTTATCCT 3155 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAG 152070 |||| || || ||| | || | | | || |||| || || || | || || | Sbjct 3156 GAATCTTAGCCTTCACATTATCGATGGTATC---ACTCGATTCGACATCCAAGGTGATTG 3212 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||| || |||| |||||| Sbjct 3213 TCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq27769 Length=1647 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 ||| ||||| ||||||||||| ||||| || ||||| | || || |||| ||| || Sbjct 580 AGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCTAATTGTTTACC 639 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 |||||||| || | |||||| || | | || |||||||| ||||| ||||| ||| Sbjct 640 TGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTCCTTATCTTGTATTTTAACTTT 699 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | |||| | || | ||| || || | || ||||| || || ||||| || Sbjct 700 CACATTATCTATAGTATCACTAGACTCGACATCCAACGTGATAGTCTTACCAGTGAGCGT 759 Query 152087 CTTCACGAAGACCTGCAT 152104 ||| ||||| | |||||| Sbjct 760 CTTGACGAATATCTGCAT 777 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||||||||| |||||||| || || || || || || | || | |||||||| Sbjct 797 ACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCA 856 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| || || ||||| || | |||||| || | | |||||||||||| ||||| Sbjct 857 AGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGT 916 Query 152016 ATTTTTTGTTTGACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 || || || ||| | || | || | ||| | ||| || || || || ||||| | Sbjct 917 ATCTTGGCCTTCACATTATCAATCGTATCACTGGA--CTCCACATCGAGGGTGATAGTCT 974 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || |||||||| || | ||||| || Sbjct 975 TTCCAGTTAGTGTCTTCACAAAAATTTGCATGTT 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153163163609435