Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq27769 152 1e-31 seq37552 129 1e-24 seq753 118 3e-21 seq37601 93.3 1e-13 >seq27769 Length=1647 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || || ||||| || ||||||||||| ||||| | || Sbjct 1002 CAAATTTTTGTGAAGACACTAACTGGAAAGACTATCACCCTCGATGTGGAGTCCAGTGAT 943 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || ||||| ||||||||||| || || ||||| Sbjct 942 ACGATTGATAATGTGAAGGCCAAGATACAAGACAAGGAAGGAATCCCCCCCGATCAGCAG 883 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || |||||||| |||||||| | || ||||| || ||||| | Sbjct 882 CGACTGATCTTTGCTGGTAAACAGCTTGAAGATGGCCGCACACTTGCTGACTATAATATA 823 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || ||||| ||||| || ||||| ||||| Sbjct 822 CAGAAAGAGTCAACTCTTCATCTCGTTTT 794 >seq37552 Length=3269 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| ||||| || |||||| | || || ||| || Sbjct 3243 CAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCTTGGATGTCGAATCGAGTGAT 3184 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||||||||| || || || ||||| || || ||||| Sbjct 3183 ACCATCGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCCCCTGATCAGCAG 3124 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| || || ||||||||| | || || |||||||| ||| | Sbjct 3123 CGTTTGATCTTCGCTGGAAAGCAACTGGAAGATGGACGTACCCTGGCCGATTACAACATT 3064 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || ||||| ||| | ||| Sbjct 3063 CAGAAGGAGTCTACTCTTCACCTTGTGTTGCGTCTC 3028 >seq753 Length=412 Score = 118 bits (130), Expect = 3e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || || || || || || || || |||||| || Sbjct 158 CAGATCTTTGTTAAAACTCTTACTGGTAAGACTATTACGCTTGATGTAGAAAGCAGCGAT 99 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||||| || ||||| ||||||||||| ||||| Sbjct 98 ACAATTGATAACGTCAAGGCGAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCAGCAG 39 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||| |||||||| ||||| || ||||| Sbjct 38 CGCCTGATCTTTGCCGGAAAGCAGCTTGAGGATGG 4 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || || || |||||||| ||||| || |||||||| || || ||| ||| Sbjct 386 CAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCCTGGATGTTGAATCTAGC--- 330 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || ||||| || || || || || ||||| || || || |||||||| || ||| Sbjct 329 GATACTATCGATAATGTGAAGGCTAAAATCCAGGATAAGGAGGGTATCCCTCCTGATCAG 270 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | || || || ||||| ||| | ||||||||| | || || ||||| || || Sbjct 269 CAGCGTTTAATTTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTAGCCGACTACAAT 210 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || || || |||||||||||| | ||| | |||| Sbjct 209 ATTCAGAAGGAGTCAACACTGCATTTGGTTCTTCGACT 172 >seq37601 Length=3285 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| ||||| || || ||||| || |||||||||||||| || ||||| ||||||||| | Sbjct 2313 AGGTATCCCCCCTGATCAGCAGCGTCTTATCTTCGCCGGTAAGCAGCTGGAAGATGGACG 2372 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| |||||| |||| || || || || || || || ||| Sbjct 2373 CACACTAGCCGACTATAACATCCAGAAGGAGTCCACCCTTCACCTGGTT 2421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203045116475090