Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq37552 109 5e-19 seq37601 89.7 5e-13 seq753 87.8 2e-12 >seq37552 Length=3269 Score = 109 bits (120), Expect = 5e-19 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| ||||| || || || || ||||||||||||||| || |||| Sbjct 3020 CCTCCGCGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCC 3079 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || ||||| || ||||| |||| ||||| || || | ||| Sbjct 3080 AGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGG 3139 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812 | || |||||| ||| ||| | || | ||||| | | || | || || ||||| || Sbjct 3140 ATGCCCTCCTTATCC-TGAATCTTAGCCTTCACATTATCG--ATGGTATCACTCGATTCG 3196 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || || || ||||| || || |||||||| Sbjct 3197 ACATCCAAGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq37601 Length=3285 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||||||||||| Sbjct 2438 CCACCACGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGCT 2379 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||| |||||||| || || ||||| || || | ||| Sbjct 2378 AGTGTGCGTCCATCTTCCAGCTGCTTACCGGCGAAGATAAGACGCTGCTGATCAGGGGG 2320 >seq753 Length=412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| |||||| || |||||||||||| || ||||||| Sbjct 163 CCACCACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCT 222 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||| || || || || | ||||| || || | || Sbjct 223 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGG 282 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| |||||| ||||| | | || | ||| ||||| || || | Sbjct 283 ATACCCTCCTTATCCTGGATTTTAGCCTTCACATTATCG--ATAGTATCGCTAGATTCAA 340 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || || || ||||| || || |||||||| Sbjct 341 CATCCAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462046930082000