Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq228 172 6e-38 seq100 82.4 8e-11 >seq228 Length=561775 Score = 172 bits (190), Expect = 6e-38 Identities = 157/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||| | || ||||| ||||| ||||| || |||| ||||||| |||||||||| |||| Sbjct 21922 AATGTAGATCTTCGTTAAAACTCTCACCGGAAAAAACATCACCCTCGACGTCGAGCCCAC 21981 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | || ||||||||| || || | ||||| |||| |||||| | ||||| Sbjct 21982 CGAAACCATCCAGTCGCTCAAGGCCAAGATCCAGGACAAGGAGGCCATCCCTCCTGACCA 22041 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| |||||| || ||||| || ||| | ||||| ||| ||||||||| Sbjct 22042 GCAACGTCTTATCTTCGCGGGTAAGCAGCTCGAGGACAACCGCACGCTCTCCGACTACAA 22101 Query 40869 CATCCAGAAGGAGGCCAC 40886 ||||||||||||| |||| Sbjct 22102 CATCCAGAAGGAGTCCAC 22119 >seq100 Length=136161 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| ||||||| ||||| |||| || || | || Sbjct 19175 AATGCAGATCTTCGTTAAGACACTCACTGGCAAAAATATCACTCTCGATGTTGAGCCTAC 19234 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | || |||| || ||| || || || | || || | || || Sbjct 19235 TGAAACCATTCAATCTCTTAAGGCTAAGATTTAGGATAAGGAAGCTATACCTCCTGATCA 19294 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| ||||||| ||| || || ||| | || || | || || ||| || || || Sbjct 19295 ATAACGTCTCATCTTCGCTGGTAAGCAGTTAGAAGATAACCGTACTCTCTCTGATTATAA 19354 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| | ||| |||| Sbjct 19355 TATCCAGAAGGAATCCACTATTCATTTAGT 19384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217699424080