Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq100 122 3e-22 seq145 95.1 5e-14 seq43 95.1 5e-14 seq162 89.7 2e-12 >seq100 Length=136161 Score = 122 bits (134), Expect = 3e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || |||||||| ||||| ||||| |||| ||| ||||| |||||||| | | Sbjct 19175 AATGCAGATCTTCGTTAAGACACTCACTGGCAAAAATATCACTCTCGATGTTGAGCCTAC 19234 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||| || || |||| || ||| | |||||||||| || ||||||||||| Sbjct 19235 TGAAACCATTCAATCTCTTAAGGCTAAGATTTAGGATAAGGAAGCTATACCTCCTGATCA 19294 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 | ||||| | || ||| | || || || | |||||| | ||| | | |||||||| Sbjct 19295 ATAACGTCTCATCTTCGCTGGTAAGCAGTTAGAAGATAACCGTACTCTCTCTGATTATAA 19354 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || |||| ||||| Sbjct 19355 TATCCAGAAGGAATCCACTATTCATTTAGT 19384 >seq145 Length=169551 Score = 95.1 bits (104), Expect = 5e-14 Identities = 185/273 (68%), Gaps = 9/273 (3%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || ||||| || || || ||||| || || || |||||||||||||| | ||| Sbjct 166442 ACCGTTCCTGCATACTTTTCGGATGCTCAGCGTTCTGCCACTAAAGATGCAGGTCGAATT 166501 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | | || |||| |||||||| || || |||||||| |||| || | || Sbjct 166502 GCTGGACTCGAGATTATTCGTATTATTAACGAGCCAACAGCAGCATCTCTTGCTTTCGGT 166561 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 | | || |||| || ||| | |||||| || |||| ||||||| || Sbjct 166562 GTCG----ATAAAAA-----AGGTGAACGGACTATTTTGACATATGATCTTGGTGGTGGT 166612 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 ||| |||| ||| | |||| || || | || ||||| ||||| || ||||| Sbjct 166613 ACTTTTGATGTGTCTATCCTTTAGATAGAGAACGGTGTATTCGAAGTGCTTGCTACCAAC 166672 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || ||||| ||| ||||||| || ||| ||||| Sbjct 166673 GGAGATACCCATTTAGGAGGCGAGGATTTTGAT 166705 >seq43 Length=317374 Score = 95.1 bits (104), Expect = 5e-14 Identities = 185/273 (68%), Gaps = 9/273 (3%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || ||||| || || || ||||| || || || |||||||||||||| | ||| Sbjct 497 ACCGTTCCTGCATACTTTTCGGATGCTCAGCGTTCTGCCACTAAAGATGCAGGTCGAATT 556 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | | || |||| |||||||| || || |||||||| |||| || | || Sbjct 557 GCTGGACTCGAGATTATTCGTATTATTAACGAGCCAACAGCAGCATCTCTTGCTTTCGGT 616 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 | | || |||| || ||| | |||||| || |||| ||||||| || Sbjct 617 GTCG----ATAAAAA-----AGGTGAACGGACTATTTTGACATATGATCTTGGTGGTGGT 667 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 ||| |||| ||| | |||| || || | || ||||| ||||| || ||||| Sbjct 668 ACTTTTGATGTGTCTATCCTTTAGATAGAGAACGGTGTATTCGAAGTGCTTGCTACCAAC 727 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || ||||| ||| ||||||| || ||| ||||| Sbjct 728 GGAGATACCCATTTAGGAGGCGAGGATTTTGAT 760 >seq162 Length=328540 Score = 89.7 bits (98), Expect = 2e-12 Identities = 164/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 ||||||||||||||| ||| | | | || ||| || | ||||||||||||||| Sbjct 148687 GATAAAAGTACTTTAGAAATTGTCAGAACAGGTGACCAATTCTATTTTAAAATATCTAAG 148628 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 || || ||||| || | |||||||||||| |||| |||| |||| | | | Sbjct 148627 CATATATCACCTTTAAGAGAAATATTTGGATGGAAAATCTTTGTTTCAAATGAACAGTGA 148568 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || || ||| ||||||| |||||| | | |||| |||||| ||| Sbjct 148567 GGTGGTCTAAAAGGGTAATCTGGAGGAAAATTAATTTTAAGATTAAATAATCCACCTTCA 148508 Query 96287 TAGGGTGTTCCTGAAGGGCCAACTAAAGTTCCATCCCATAAATTTAAATTAGT-TTTAT 96344 || || || ||| |||| || |||| || ||| |||||||| | | ||||| Sbjct 148507 TATAAAGTATCTTTAGGACCAATTATAGTTGCAGTCCAATTATTTAAATCATTATTTAT 148449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975712501863164