Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq151 161 1e-34 seq115 152 7e-32 >seq151 Length=401215 Score = 161 bits (178), Expect = 1e-34 Identities = 539/833 (65%), Gaps = 22/833 (3%) Strand=Plus/Minus Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 ||||||| || ||||| |||||||| | |||| |||||| || |||| ||| | Sbjct 399269 GAAGATAGGGTACGCTTAGCGCGCTCGACTGAAGTTCTTAAACGGCGGAGGGAACGATTG 399210 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450 || |||||| || || || ||||| || ||||| ||| | || |||| Sbjct 399209 TTGTTGGAAATGTCCTTGTTGTGTTTCTTCTTGAACTCGGTGACGAAATAGTTAACGAGT 399150 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 || |||| ||| |||||||| | || | | || || || || |||||| || Sbjct 399149 CTGTTGTCGATATCCTCACCACCAAGATGAGAGTTACCAGCAGTGGCACGGACTTCGAAA 399090 Query 7511 ATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG 7570 | | | || | || | | ||| || || |||||||| || | || || | | Sbjct 399089 ACATCGTTGTCTAAATTGAGGATAGAAGAGTCGAAGGTACCACCGCCGAAATCGAAGACG 399030 Query 7571 AGTACGTTCGTATCGTC---------GTCTTTGTTCTTATCGAG---ACCGTACGCGATA 7618 || | |||| ||| | ||| |||| ||| | ||| ||| ||||||||| Sbjct 399029 AGAATGTTCTCCTCGCCCTTGGCGGTGTCCTTGTGCTTCTGGAGGAAACCATACGCGATA 398970 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA-ATAGTTGCCGC 7677 || || || || ||||| || || | || ||||| || || ||| || || || Sbjct 398969 CAGGCAGCGGTAGGCTCATTGATGATTCTGAGGCAGTTGAGCCC-GCAGATCTGAGCGGC 398911 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 || | || |||| || || | ||| | || || || || || || | || ||||| Sbjct 398910 ATTCTGGGTAGCTTTACGCTGGGCATCAGTGAAATAAGCTGGAACGGTGATAACAGCGTC 398851 Query 7738 CGTGACTTTCTTACCGA-GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 | |||| ||| || | || | || || | | ||||| ||| || | ||| | Sbjct 398850 CTGTACTTCCTTGCCTAAGAAATCGTTG-GCAGTCTACTTCATCTTGAGGAGGATCATGG 398792 Query 7797 ATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGG 7856 |||| || || || | | || |||| ||||| || || || | ||||| ||||| | Sbjct 398791 ATGAGATTTCCTCTGGAGTGAAACGTTTAGTTTCGCCCTTGTAAACTACTTCGATCATTG 398732 Query 7857 GTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCT 7916 |||| || | | ||| || | | | | | | ||||||||||||| || | Sbjct 398731 GTTTGTCATCGACGCCGACGA---CGGTGAAGGGGAAGTGCTTCATATCGTCTTAAACGT 398675 Query 7917 GTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGT 7976 || ||||| |||| ||||| |||||||| ||||| ||||| ||||||| || | Sbjct 398674 CAGCCTCGGAAAATCTTCTACCGATGAGACGCTTAGCATCGAAAACGGTGTTTTCGGCAT 398615 Query 7977 TCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACG 8036 |||||| | |||||||| || || || ||||| ||||| || || || ||||| | Sbjct 398614 TCATGGAAGCCTGGTTCTTGGCAGCCTCACCGATGAGACGCTC---GTTCTCGGTAAAGG 398558 Query 8037 CGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGT 8096 | ||||| || || || || || ||| || || ||||| || || || || | Sbjct 398557 CAACGTAAGAGGGTGTGGTGTAGGAACCGACGTCATTGGCGATAATCTCGACACGTTCAT 398498 Query 8097 TTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 | || |||| || || || || || || || |||||||| ||||| |||||| Sbjct 398497 TCTGGAAGACACCAACACAAGAGTAGGTAGTACCTAAATCTATACCAATTGCT 398445 Score = 129 bits (142), Expect = 7e-25 Identities = 180/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||||||||||| || | || ||||| |||| ||||| |||||||| ||||| Sbjct 400936 TTCATATCGTCTTAAACGTCAGCCTCGGAAAATCTTCTACCGATGAGACGCTTAGCATCG 400877 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 ||||| ||||||| || ||||||| | |||||||| || || || ||||| ||||| Sbjct 400876 AAAACGGTGTTTTCGGCATTCATGGAAGCCTGGTTCTTGGCAGCCTCACCGATGAGACGC 400817 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || || || ||||| || ||||| || || || || || ||| || || Sbjct 400816 TC---GTTCTCGGTAAAGGCAACGTAAGAGGGTGTGGTGTAGGAACCGACGTCATTGGCG 400760 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 ||||| || || || || || || |||| || || || || || || || |||||||| Sbjct 400759 ATAATCTCGACACGTTCATTCTGGAAGACACCAACACAAGAGTAGGTAGTACCTAAATCT 400700 Query 8138 ATACCGATTGCT 8149 ||||| |||||| Sbjct 400699 ATACCAATTGCT 400688 >seq115 Length=114665 Score = 152 bits (168), Expect = 7e-32 Identities = 538/833 (65%), Gaps = 23/833 (3%) Strand=Plus/Plus Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 ||||||| || ||||| |||||||| | |||| |||||| || |||| ||| | Sbjct 113060 GAAGATAGGGTACGCTTAGCGCGCTCGACTGAAGTTCTTAAACGGCGGAGGGAACGATTG 113119 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450 || |||||| || || || ||||| || ||||| ||| | || |||| Sbjct 113120 TTGTTGGAAATGTCCTTGTTGTGTTTCTTCTTGAACTCGGTGACGAAATAGTTAACGAGT 113179 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 || |||| ||| |||||||| | || | | || || || || |||||| || Sbjct 113180 CTGTTGTCGATATCCTCACCACCAAGATGAGAGTTACCAGCAGTGGCACGGACTTCGAAA 113239 Query 7511 ATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG 7570 | | | || | || | | ||| || || |||||||| || | || || | | Sbjct 113240 ACATCGTTGTCTAAATTGAGGATAGAAGAGTCGAAGGTACCACCGCCGAAATCGAAGACG 113299 Query 7571 AGTACGTTCGTATCGTC---------GTCTTTGTTCTTATCGAG---ACCGTACGCGATA 7618 || | |||| ||| | ||| |||| ||| | ||| ||| ||||||||| Sbjct 113300 AGAATGTTCTCCTCGCCCTTGGCGGTGTCCTTGTGCTTCTGGAGGAAACCATACGCGATA 113359 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA-ATAGTTGCCGC 7677 || || || || ||||| || || | | ||||| || || ||| || || || Sbjct 113360 CAGGCAGCGGTAGGCTCATTGATGATTCTGGG-CAGTTGAGCCC-GCAGATCTGAGCGGC 113417 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 || | || |||| || || | ||| | || || || || || || | || ||||| Sbjct 113418 ATTCTGGGTAGCTTTACGCTGGGCATCAGTGAAATAAGCTGGAACGGTGATAACAGCGTC 113477 Query 7738 CGTGACTTTCTTACCGA-GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 | |||| ||| || | || | || || | | ||||| ||| || | ||| | Sbjct 113478 CTGTACTTCCTTGCCTAAGAAATCGTTG-GCAGTCTACTTCATCTTGAGGAGGATCATGG 113536 Query 7797 ATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGG 7856 |||| || || || | | || |||| ||||| || || || | ||||| ||||| | Sbjct 113537 ATGAGATTTCCTCTGGAGTGAAACGTTTAGTTTCGCCCTTGTAAACTACTTCGATCATTG 113596 Query 7857 GTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCT 7916 |||| || | | ||| || | | | | | | ||||||||||||| || | Sbjct 113597 GTTTGTCATCGACGCCGACGA---CGGTGAAGGGGAAGTGCTTCATATCGTCTTAAACGT 113653 Query 7917 GTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGT 7976 || ||||| |||| ||||| |||||||| ||||| ||||| ||||||| || | Sbjct 113654 CAGCCTCGGAAAATCTTCTACCGATGAGACGCTTAGCATCGAAAACGGTGTTTTCGGCAT 113713 Query 7977 TCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACG 8036 |||||| | |||||||| || || || ||||| ||||| || || || ||||| | Sbjct 113714 TCATGGAAGCCTGGTTCTTGGCAGCCTCACCGATGAGACGCTC---GTTCTCGGTAAAGG 113770 Query 8037 CGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGT 8096 | ||||| || || || || || ||| || || ||||| || || || || | Sbjct 113771 CAACGTAAGAGGGTGTGGTGTAGGAACCGACGTCATTGGCGATAATCTCGACACGTTCAT 113830 Query 8097 TTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 | || |||| || || || || || || || |||||||| ||||| |||||| Sbjct 113831 TCTGGAAGACACCAACACAAGAGTAGGTAGTACCTAAATCTATACCAATTGCT 113883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130950175720