Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq229 114 1e-19 seq228 96.9 3e-14 seq43 89.7 4e-12 >seq229 Length=240296 Score = 114 bits (126), Expect = 1e-19 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 |||||||| ||||||||| |||| ||| |||||| |||| ||||| |||||||| || Sbjct 183970 GATTTTTCATCACCAAATGTTGCTAAATCGATGCATGTTGGGCATTTACGTTCTACTATC 184029 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAAT 930785 ||||| || ||| | |||||| | | ||||||| ||| ||||| || || | ||| Sbjct 184030 ATTGGTGATTCTATTTGTAGACTTAACGAATATTTGGGACACAAAGTATATAGAATTAAT 184089 Query 930786 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 || | ||||||||||| || |||| || ||| | ||||| Sbjct 184090 CACTTAGGTGATTGGGGTACTTAATTCGGCATGCTCATTGC 184130 >seq228 Length=561775 Score = 96.9 bits (106), Expect = 3e-14 Identities = 118/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 |||||||||||||||||||| || || ||| ||||| | ||| | |||||| ||| Sbjct 197270 GCTATAGGTATAGATTTAGGTACTACCTATTCCTGTGTAGCTGTATATTAAAATGAAAAA 197329 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || |||||| | ||||| ||||||||| || || ||||| ||||| || || || Sbjct 197330 GTCGATATTATTCCAAATGAATTAGGTAACAGTACCACACCATCATATGTCTCATTTAC- 197388 Query 550112 GAAACTG---AACATTTAGTTGGTGATGCAGCAAAATA 550146 ||| || || | ||| |||| ||| |||| ||||| Sbjct 197389 -AAATTGCGAAAGACTTA-TTGGCGATCCAGCGAAATA 197424 >seq43 Length=317374 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 390909 TTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCT 390968 |||||||| | ||||||| | |||||||||||||| ||||||| | | ||||||||| Sbjct 215968 TTTTCTTTCAACATAACCACTATCTGCAGTTTTAATAGCAGTATCACATACACCTTCTCT 216027 Query 390969 TCCTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCAGAAATA 391017 ||| | || | |||||||||||||| ||||| |||||| | ||| Sbjct 216028 ACCTCCAATCATATGGAAGAAAAATTCACAAGGATCAAGTCCAAACATA 216076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029283677909170