Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq100 122 6e-22 seq229 114 8e-20 seq228 105 4e-17 seq177 104 2e-16 seq145 87.8 1e-11 seq43 87.8 1e-11 >seq100 Length=136161 Score = 122 bits (134), Expect = 6e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| || | ||||| || ||| || | ||||||||||| ||||| | | Sbjct 19393 AGACGGAGAACTAAATGAATAGTGGATTCCTTCTGGATATTATAATCAGAGAGAGTACGG 19334 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||||| | ||||| ||||| || || ||||||| |||||||||||| || ||||| Sbjct 19333 TTATCTTCTAACTGCTTACCAGCGAAGATGAGACGTTATTGATCAGGAGGTATAGCTTCC 19274 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 || || | |||||| || | || || ||| || ||||| | | || || || Sbjct 19273 TTATCCTAAATCTTAGCCTTAAGAGATTGAATGGTTTCAGTAGGCTCAACATCGAGAGTG 19214 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| |||| || ||||| ||||||||||| || || Sbjct 19213 ATATTTTTGCCAGTGAGTGTCTTAACGAAGATCTG 19179 >seq229 Length=240296 Score = 114 bits (126), Expect = 8e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 817081 TCCAACAAAAATTTTAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGG 817140 |||| || |||| | ||||||||||||| |||||| |||| || |||||| |||| Sbjct 183951 TCCATTAATAATTGCAGTAGATTTTTCATCACCAAATGTTGCTAAATCGATGCATGTTGG 184010 Query 817141 ACACTTGAGATCTACAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATG 817200 || || | ||||| || |||||||| ||| |||||||| | | |||| || ||| Sbjct 184011 GCATTTACGTTCTACTATCATTGGTGATTCTATTTGTAGACTTAACGAATATTTGGGACA 184070 Query 817201 TGAAGTACAAAGAATAAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||| | ||||| ||||| | ||||||||||| || |||| || ||| | ||||| Sbjct 184071 CAAAGTATATAGAATTAATCACTTAGGTGATTGGGGTACTTAATTCGGCATGCTCATTGC 184130 Query 817261 A 817261 | Sbjct 184131 A 184131 >seq228 Length=561775 Score = 105 bits (116), Expect = 4e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| |||||||| ||||| || ||||||||||| | |||||| ||| Sbjct 197270 GCTATAGGTATAGATTTAGGTACTACCTATTCCTGTGTAGCTGTATATTAAAATGAAAAA 197329 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||| | ||||| |||||| || || |||||||||||||| || ||||| Sbjct 197330 GTCGATATTATTCCAAATGAATTAGGTAACAGTACCACACCATCATATGTCTCATTTAC- 197388 Query 474449 GAAACT--GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506 ||| | ||| |||||||| ||| | || ||||| | || ||| |||| | | Sbjct 197389 -AAATTGCGAAAGACTTATTGGCGATCCAGCGAAATAACTTGCAGCAATTAATACATAGA 197447 Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGG 474537 |||| || | |||| |||||| | || || Sbjct 197448 ATACAATATATGATATAAAAAGAATTATAGG 197478 >seq177 Length=311930 Score = 104 bits (114), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 296076 TGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAATC 296135 |||||| ||||||||| | || || || |||||||| | | | |||||||| || Sbjct 14288 TGGAAGGTGGATTGATTTCAAGAACGACTATAAAACTCTCAAACCTGAATTTATGGAGTC 14229 Query 296136 TGTTATTTGGTCATTTAAACAACTTTATGAAAAGGAAATGATTTTTGAAGGTTATAAAGT 296195 |||| ||| |||||| |||||| ||||| | ||| ||| | | ||| |||||| Sbjct 14228 TGTTTGGTGGGTATTTAAGTAACTTTGGCAAAAGAATATGGTTTATTAGGGTGTTAAAGT 14169 Query 296196 TATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAATTA 296255 ||||||||| || ||||| || ||| || | || | ||||| ||| |||||||| Sbjct 14168 TATGCCTTACTCAACTGGATGTGCTACTTCACTTTCAAACTTTGAAGCAGGTCAAAATTA 14109 Query 296256 TAAAGAGATTATTGATCCAT 296275 |||||| || ||||||| Sbjct 14108 TAAAGATGTTTAGGATCCAT 14089 >seq145 Length=169551 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || ||||| ||||| ||| ||| |||| ||| || ||||||||||| || ||||| Sbjct 166442 ACCGTTCCTGCATACTTTTCGGATGCTCAGCGTTCTGCCACTAAAGATGCAGGTCGAATT 166501 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || || | || | ||||||||||| || ||||||||||| | ||||||| ||| Sbjct 166502 GCTGGACTCGAGATTATTCGTATTATTAACGAGCCAACAGCAGCATCTCTTGCTTTCGGT 166561 Query 474866 CTTGATAAGAA 474876 | ||||| || Sbjct 166562 GTCGATAAAAA 166572 >seq43 Length=317374 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || ||||| ||||| ||| ||| |||| ||| || ||||||||||| || ||||| Sbjct 497 ACCGTTCCTGCATACTTTTCGGATGCTCAGCGTTCTGCCACTAAAGATGCAGGTCGAATT 556 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || || | || | ||||||||||| || ||||||||||| | ||||||| ||| Sbjct 557 GCTGGACTCGAGATTATTCGTATTATTAACGAGCCAACAGCAGCATCTCTTGCTTTCGGT 616 Query 474866 CTTGATAAGAA 474876 | ||||| || Sbjct 617 GTCGATAAAAA 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268169205499484