Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq151 208 1e-48 seq115 199 5e-46 seq228 122 1e-22 >seq151 Length=401215 Score = 208 bits (230), Expect = 1e-48 Identities = 477/715 (67%), Gaps = 20/715 (3%) Strand=Plus/Plus Query 195289 AATGTCT---CAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATG 195345 ||||||| | ||| |||||||| |||||||| ||||| ||||| ||||||||||| | Sbjct 398433 AATGTCTGCCCCAGCAATTGGTATAGATTTAGGTACTACCTACTCTTGTGTTGGTGTCTT 398492 Query 195346 GCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTA 195405 || ||||| ||||| ||||||||| | |||||| || | || || || || || Sbjct 398493 CCAGAATGAACGTGTCGAGATTATCGCCAATGACGTCGGTTCCTACACCACACCCTCTTA 398552 Query 195406 CGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTAT 195465 |||||||||||| || || || |||||| | || || || || || || ||| | | || Sbjct 398553 CGTTGCCTTTACCGAGAACGAGCGTCTCATCGGTGAGGCTGCCAAGAACCAGGCTTCCAT 398612 Query 195466 GAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAA 195525 ||| | || || || || || || |||||||| || ||| | | ||||| || Sbjct 398613 GAATGCCGAAAACACCGTTTTCGATGCTAAGCGTCTCATCGGTAGAAGATTTTCCGAGGC 398672 Query 195526 GAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAA 195585 | || |||||||||| ||| ||| | | || || ||| || | ||| || Sbjct 398673 TGACGTTTAAGACGATATGAAGCACTTCCCCTTCACCGTCGT---CGGCGTCGATGACAA 398729 Query 195586 GCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTC 195645 || ||||| | || | | | || || | |||| || |||| || ||||| || Sbjct 398730 ACCAATGATCGAAGTAGTTTACAAGGGCGAAACTAAACGTTTCACTCCAGAGGAAATCTC 398789 Query 195646 GTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAA 195705 || ||| | | | ||||||||| ||||||| | |||| | || || || | Sbjct 398790 ATCCATGATCCTCCTCAAGATGAAGTAGACTGCCAACGATTTCTTAGGCAAGGAAGTACA 398849 Query 195706 AGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGA 195765 || || ||| | || || || ||||| |||| |||| | || || | || || || | Sbjct 398850 GGACGCTGTTATCACCGTTCCAGCTTATTTCACTGATGCCCAGCGTAAAGCTACCCAGAA 398909 Query 195766 CGCTGCTGCTAT-TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTG 195824 || ||| || |||||| || ||||| || ||||| |||||||| || || || || Sbjct 398910 TGCCGCTCAGATCTGCGGG-CTCAACTGCCTCAGAATCATCAATGAGCCTACCGCTGCCT 398968 Query 195825 CAATTGCTTATGGT---CTGGACAAGAACAAGGAC---------GAAGATAAAAATGTAT 195872 || || |||||| || | ||| |||||||| | || | || | Sbjct 398969 GTATCGCGTATGGTTTCCTCCAGAAGCACAAGGACACCGCCAAGGGCGAGGAGAACATTC 399028 Query 195873 TGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTA 195932 | |||| ||| |||| |||||||| || || || | |||||| | || | | Sbjct 399029 TCGTCTTCGATTTCGGCGGTGGTACCTTCGACTCTTCTATCCTCAATTTAGACAACGATG 399088 Query 195933 TATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | |||||||| || ||||||||| | ||||||| |||||||| ||| |||| Sbjct 399089 TTTTCGAAGTCCGTGCCACTGCTGGTAACTCTCATCTTGGTGGTGAGGATATCGA 399143 Score = 178 bits (196), Expect = 2e-39 Identities = 366/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 195289 AATGTCT---CAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATG 195345 ||||||| | ||| |||||||| |||||||| ||||| ||||| ||||||||||| | Sbjct 400676 AATGTCTGCCCCAGCAATTGGTATAGATTTAGGTACTACCTACTCTTGTGTTGGTGTCTT 400735 Query 195346 GCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTA 195405 || ||||| ||||| ||||||||| | |||||| || | || || || || || Sbjct 400736 CCAGAATGAACGTGTCGAGATTATCGCCAATGACGTCGGTTCCTACACCACACCCTCTTA 400795 Query 195406 CGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTAT 195465 |||||||||||| || || || |||||| | || || || || || || ||| | | || Sbjct 400796 CGTTGCCTTTACCGAGAACGAGCGTCTCATCGGTGAGGCTGCCAAGAACCAGGCTTCCAT 400855 Query 195466 GAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAA 195525 ||| | || || || || || || |||||||| || ||| | | ||||| || Sbjct 400856 GAATGCCGAAAACACCGTTTTCGATGCTAAGCGTCTCATCGGTAGAAGATTTTCCGAGGC 400915 Query 195526 GAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAA 195585 | || |||||||||| ||| ||| | | || || ||| || | ||| || Sbjct 400916 TGACGTTTAAGACGATATGAAGCACTTCCCCTTCACCGTCGT---CGGCGTCGATGACAA 400972 Query 195586 GCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTC 195645 || ||||| | || | || || || | ||| || || |||| || ||||| || Sbjct 400973 ACCAATGATCGAAGT--AGTTACAAGG-GCGAACTAAACGTTCACTCCAGAGGAAATCTC 401029 Query 195646 GTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAA 195705 || ||| | | | ||||||||| ||||||| | |||| | || || || | Sbjct 401030 ATCCATGATCCTCCTCAAGATGAAGTAGACTGCCAACGATTTCTTAGGCAAGGAAGTACA 401089 Query 195706 AGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGA 195765 || || ||| | || || || ||||| |||| |||| | || || | || || || | Sbjct 401090 GGACGCTGTTATCACCGTTCCAGCTTATTTCACTGATGCCCAGCGTAAAGCTACCCAGAA 401149 Query 195766 CGCTGCTGCTAT-TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGC 195822 || ||| || |||||| || ||||| || ||||| |||||||| || || || || Sbjct 401150 TGCCGCTCAGATCTGCGGG-CTCAACTGCCTCAGAATCATCAATGAGCCTACCGCTGC 401206 >seq115 Length=114665 Score = 199 bits (220), Expect = 5e-46 Identities = 476/715 (67%), Gaps = 21/715 (3%) Strand=Plus/Minus Query 195289 AATGTCT---CAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATG 195345 ||||||| | ||| |||||||| |||||||| ||||| ||||| ||||||||||| | Sbjct 113895 AATGTCTGCCCCAGCAATTGGTATAGATTTAGGTACTACCTACTCTTGTGTTGGTGTCTT 113836 Query 195346 GCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTA 195405 || ||||| ||||| ||||||||| | |||||| || | || || || || || Sbjct 113835 CCAGAATGAACGTGTCGAGATTATCGCCAATGACGTCGGTTCCTACACCACACCCTCTTA 113776 Query 195406 CGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTAT 195465 |||||||||||| || || || |||||| | || || || || || || ||| | | || Sbjct 113775 CGTTGCCTTTACCGAGAACGAGCGTCTCATCGGTGAGGCTGCCAAGAACCAGGCTTCCAT 113716 Query 195466 GAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAA 195525 ||| | || || || || || || |||||||| || ||| | | ||||| || Sbjct 113715 GAATGCCGAAAACACCGTTTTCGATGCTAAGCGTCTCATCGGTAGAAGATTTTCCGAGGC 113656 Query 195526 GAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAA 195585 | || |||||||||| ||| ||| | | || || ||| || | ||| || Sbjct 113655 TGACGTTTAAGACGATATGAAGCACTTCCCCTTCACCGTCGT---CGGCGTCGATGACAA 113599 Query 195586 GCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTC 195645 || ||||| | || | | | || || | |||| || |||| || ||||| || Sbjct 113598 ACCAATGATCGAAGTAGTTTACAAGGGCGAAACTAAACGTTTCACTCCAGAGGAAATCTC 113539 Query 195646 GTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAA 195705 || ||| | | | ||||||||| ||||||| | |||| | || || || | Sbjct 113538 ATCCATGATCCTCCTCAAGATGAAGTAGACTGCCAACGATTTCTTAGGCAAGGAAGTACA 113479 Query 195706 AGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGA 195765 || || ||| | || || || ||||| |||| |||| | || || | || || || | Sbjct 113478 GGACGCTGTTATCACCGTTCCAGCTTATTTCACTGATGCCCAGCGTAAAGCTACCCAGAA 113419 Query 195766 CGCTGCTGCTAT-TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTG 195824 || ||| || |||||| || ||||| | ||||| |||||||| || || || || Sbjct 113418 TGCCGCTCAGATCTGCGGG-CTCAACTG-CCCAGAATCATCAATGAGCCTACCGCTGCCT 113361 Query 195825 CAATTGCTTATGGT---CTGGACAAGAACAAGGAC---------GAAGATAAAAATGTAT 195872 || || |||||| || | ||| |||||||| | || | || | Sbjct 113360 GTATCGCGTATGGTTTCCTCCAGAAGCACAAGGACACCGCCAAGGGCGAGGAGAACATTC 113301 Query 195873 TGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTA 195932 | |||| ||| |||| |||||||| || || || | |||||| | || | | Sbjct 113300 TCGTCTTCGATTTCGGCGGTGGTACCTTCGACTCTTCTATCCTCAATTTAGACAACGATG 113241 Query 195933 TATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | |||||||| || ||||||||| | ||||||| |||||||| ||| |||| Sbjct 113240 TTTTCGAAGTCCGTGCCACTGCTGGTAACTCTCATCTTGGTGGTGAGGATATCGA 113186 >seq228 Length=561775 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||| | ||||| || ||||| || || ||||||| ||||||||||| || ||| | | Sbjct 21923 ATGTAGATCTTCGTTAAAACTCTCACCGGAAAAAACATCACCCTCGACGTCGAGCCCACC 21982 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||| | |||| |||||||| || || ||||| | ||| || || || ||| Sbjct 21983 GAAACCATCCAGTCGCTCAAGGCCAAGATCCAGGACAAGGAGGCCATCCCTCCTGACCAG 22042 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| ||||| || || ||||| ||||| || || || || ||| | || |||||| Sbjct 22043 CAACGTCTTATCTTCGCGGGTAAGCAGCTCGAGGACAACCGCACGCTCTCCGACTACAAC 22102 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || | ||||| || || Sbjct 22103 ATCCAGAAGGAGTCCACCATCCACCTCGTACT 22134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860483975760