Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq228 154 1e-31 seq229 129 4e-24 seq43 86.0 5e-11 >seq228 Length=561775 Score = 154 bits (170), Expect = 1e-31 Identities = 364/544 (67%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 282340 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 282399 || |||||| |||| | || |||||||||||||| ||||| |||| | ||| || || Sbjct 197809 AAAACCATATGCAATACAGGCGGCAGTTGGTTCATTTATAATCCTCAGACAATTTAGTCC 197750 Query 282400 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 282459 ||||||| || |||| | || | | |||| || || ||||||| ||||| || Sbjct 197749 AGCAATTTTTGATGCAGTAATTGTAGAGTTCCTTTATGCGTCAGTAAAATACGCAGGTAC 197690 Query 282460 AGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT--TCATT 282517 |||||||| | ||| || | || | |||| | ||| || | | ||| Sbjct 197689 TGTAATAACTACCTCTTTTGGCCTATAACCTAAATAATCTTCTGCA-TTAGAAGATAATT 197631 Query 282518 TTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATAT 282577 || | || || | || || |||| ||| |||| | || || || ||| | | Sbjct 197630 TTTGT-AATATAAAAGAAGATATTTATTCAGGAGTAAATATATTTACTTAATTCATAAAA 197572 Query 282578 GATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATA 282637 || |||| | | |||| |||| |||| ||| | ||| || || | ||| ||| Sbjct 197571 GAAACTTATACACATGGATTATCGTCAACTGAAATTATTTTGAAGGGATATTATGAAATA 197512 Query 282638 TCTGATTGAACACTT--TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAA 282695 || ||| | |||| | ||| |||| ||| || || | || |||| |||| | | Sbjct 197511 TC--ATTCTATACTTCATTGTCTGTAAATCTTCTGCCTATAATTCTTTTTATATCATATA 197454 Query 282696 TAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTG 282755 | ||||| || ||||| ||| || | ||||| |||| ||| ||||| || ||| Sbjct 197453 TTGTATTCTATGTATTAATTGCTGCAAGTTATTTCGCTGGATCGCCAATAAGTCTTTCGC 197394 Query 282756 TCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTT 282815 | ||||||||| ||||||||||| || || | |||||| ||||| | |||||| | Sbjct 197393 AATTTGTAAATGAGACATATGATGGTGTGGTACTGTTACCTAATTCATTTGGAATAATAT 197334 Query 282816 CAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 | ||||| |||||| ||||| ||||||| | | || || |||||||| ||||| | Sbjct 197333 CGACTTTTTCATTTTAATATACAGCTACACAGGAATAGGTAGTACCTAAATCTATACCTA 197274 Query 282876 TAGC 282879 |||| Sbjct 197273 TAGC 197270 >seq229 Length=240296 Score = 129 bits (142), Expect = 4e-24 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 || |||| ||| || |||||| |||||||| |||||| |||| |||||| | || ||| Sbjct 183967 GTAGATTTTTCATCACCAAATGTTGCTAAATCGATGCATGTTGGGCATTTACGTTCTACT 184026 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAA-ATGTGTGGACACGATGTTTATCGTAT 637244 || |||||||| ||||||||||| | ||| || || |||||| | || ||| | || Sbjct 184027 ATCATTGGTGATTCTATTTGTAGACTTAACGAATATTTG-GGACACAAAGTATATAGAAT 184085 Query 637245 TAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATATTAAAAATAA 637304 |||||| | ||||||||||| ||| ||||||| ||| | ||||| || |||| |||| Sbjct 184086 TAATCACTTAGGTGATTGGGGTACTTAATTCGGCATGCTCATTGCACATCTTAAGGATAA 184145 >seq43 Length=317374 Score = 86.0 bits (94), Expect = 5e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 435118 GGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAAT 435177 || |||| |||| ||||||||||||||| | || | ||| | |||||| | | || Sbjct 216069 GGACTTGATCCTTGTGAATTTTTCTTCCATATGATTGGAGGTAGAGAAGGTGTATGTGAT 216010 Query 435178 ACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAA 435219 || |||||||||||||| |||| ||||||| || |||||||| Sbjct 216009 ACTGCTATTAAAACTGCAGATAGTGGTTATGTTGAAAGAAAA 215968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740618960684658