Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq100 145 9e-30 seq228 100 3e-16 >seq100 Length=136161 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || ||||| | ||| ||||| || |||||| | Sbjct 19175 AATGCAGATCTTCGTTAAGACACTCACTGGCAAAAATATCACTCTCGATGTTGAGCCTAC 19234 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| | | | |||||||| ||| |||| ||||| | || ||||| || || Sbjct 19235 TGAAACCATTCAATCTCTTAAGGCTAAGATTTAGGATAAGGAAGCTATACCTCCTGATCA 19294 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | ||||| || || ||||||||||| | || ||| | ||||| || | || ||||| Sbjct 19295 ATAACGTCTCATCTTCGCTGGTAAGCAGTTAGAAGATAACCGTACTCTCTCTGATTATAA 19354 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| |||||||||||| ||||| |||| | ||||| | ||||| Sbjct 19355 TATCCAGAAGGAATCCACTATTCATTTAGTTCTCCGTCTCAGAGGTGG 19402 >seq228 Length=561775 Score = 100 bits (110), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| | ||||| || || || || ||||| || | || || || || || ||| | Sbjct 21922 AATGTAGATCTTCGTTAAAACTCTCACCGGAAAAAACATCACCCTCGACGTCGAGCCCAC 21981 Query 27465 TGATAGCATTGCAAATT--TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | | | | ||||| || || ||||||||||||| || ||||| ||| Sbjct 21982 CGAAACCAT--CCAGTCGCTCAAGGCCAAGATCCAGGACAAGGAGGCCATCCCTCCTGAC 22039 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||||| || || || |||||||| |||||||| | || || || | ||||| Sbjct 22040 CAGCAACGTCTTATCTTCGCGGGTAAGCAGCTCGAGGACAACCGCACGCTCTCCGACTAC 22099 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || |||| ||||| ||||| | || || || | ||||| Sbjct 22100 AACATCCAGAAGGAGTCCACCATCCACCTCGTACTCCGTCT 22140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308738970960