Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq228 114 3e-20 seq100 111 4e-19 >seq228 Length=561775 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | |||||||| || |||||||| || || | || || | || Sbjct 22134 AGTACGAGGTGGATGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGTTGTCC 22075 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| ||||| ||||||||||| | | ||||||||| Sbjct 22074 TCGAGCTGCTTACCCGCGAAGATAAGACGTTGCTGGTCAGGAGGGATGGCCTCCTTGTCC 22015 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || | | |||||| || | | || || ||||| ||||| | Sbjct 22014 TGGATCTTGGCCTTGAGCGACTGGATGGTTTCGGTGGGCTCGACGTCGAGGGTGATGTTT 21955 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| |||||||| || || || | || |||| Sbjct 21954 TTTCCGGTGAGAGTTTTAACGAAGATCTACATT 21922 >seq100 Length=136161 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||| |||||| || || ||||| |||||||| | || || | |||||| | |||| Sbjct 19378 TGAATAGTGGATTCCTTCTGGATATTATAATCAGAGAGAGTACGGTTATCTTCTAACTGC 19319 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || |||| ||| |||||||| | ||||||| |||| ||||| Sbjct 19318 TTACCAGCGAAGATGAGACGTTATTGATCAGGAGGTATAGCTTCCTTATCCTAAATCTTA 19259 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || | || ||||| |||| ||||| ||||||||||| | || || ||| Sbjct 19258 GCCTTAAGAGATTGAATGGTTTCAGTAGGCTCAACATCGAGAGTGATATTTTTGCCAGTG 19199 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | ||||||| Sbjct 19198 AGTGTCTTAACGAAGATCTGCATT 19175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148539569045