Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq228 96.9 8e-15 seq100 93.3 1e-13 >seq228 Length=561775 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||| ||||| || || |||| ||||| |||| | || | || Sbjct 22134 AGTACGAGGTGGATGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGTTGTCC 22075 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| ||||| ||||| || || || | |||||||| Sbjct 22074 TCGAGCTGCTTACCCGCGAAGATAAGACGTTGCTGGTCAGGAGGGATGGCCTCCTTGTCC 22015 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| | | | |||||| || | || || ||||| | ||||| | Sbjct 22014 TGGATCTTGGCCTTGAGCGACTGGATGGTTTCGGTGGGCTCGACGTCGAGGGTGATGTTT 21955 Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704 || || || | |||||| | ||| Sbjct 21954 TTTCCGGTGAGAGTTTTAACGAA 21932 >seq100 Length=136161 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||||||||| || |||| ||| ||||| | | ||| | |||||||| |||||| || Sbjct 19373 AGTGGATTCCTTCTGGATATTATAATCAGAGAGAGTACGGTTATCTTCTAACTGCTTACC 19314 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| || |||| ||| || || || ||| ||||||| || | ||||| ||| Sbjct 19313 AGCGAAGATGAGACGTTATTGATCAGGAGGTATAGCTTCCTTATCCTAAATCTTAGCCTT 19254 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 | || || ||||| || | | || || || | ||||| | ||||| || | || Sbjct 19253 AAGAGATTGAATGGTTTCAGTAGGCTCAACATCGAGAGTGATATTTTTGCCAGTGAGTGT 19194 Query 225696 TTTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 19193 CTTAACGAAGATCTGCATT 19175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527639921702