Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq228 120 6e-22 seq100 96.9 7e-15 >seq228 Length=561775 Score = 120 bits (132), Expect = 6e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || ||||| || || | ||| || || |||||||||||||| | ||||||||| Sbjct 22140 AGACGGAGTACGAGGTGGATGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGG 22081 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || ||||| | |||||| |||||| || || ||||| Sbjct 22080 TTGTCCTCGAGCTGCTTACCCGCGAAGATAAGACGTTGCTGGTCAGGAGGGATGGCCTCC 22021 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || | | | ||| || || | | ||||| ||||| ||| Sbjct 22020 TTGTCCTGGATCTTGGCCTTGAGCGACTGGATGGTTTCGGTGGGCTCGACGTCGAGGGTG 21961 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | || || || | ||| |||||||| |||| |||| Sbjct 21960 ATGTTTTTTCCGGTGAGAGTTTTAACGAAGATCTACATT 21922 >seq100 Length=136161 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || || || | ||| | ||| ||| || ||||| || || |||| Sbjct 19403 ACCACCTCTGAGACGGAGAACTAAATGAATAGTGGATTCCTTCTGGATATTATAATCAGA 19344 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||| ||| |||| || || || || ||||| | ||||| ||| ||| || Sbjct 19343 GAGAGTACGGTTATCTTCTAACTGCTTACCAGCGAAGATGAGACGTTATTGATCAGGAGG 19284 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| | ||||| || | ||||| || || | | | || || || | || || || Sbjct 19283 TATAGCTTCCTTATCCTAAATCTTAGCCTTAAGAGATTGAATGGTTTCAGTAGGCTCAAC 19224 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 ||||||||||| | || || || | ||||||||||| ||||||||| ||| Sbjct 19223 ATCGAGAGTGATATTTTTGCCAGTGAGTGTCTTAACGAAGATCTGCATTCTCA 19171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736075156382