Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq788 98.7 1e-15 seq959 96.9 4e-15 >seq788 Length=62525 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || ||||| |||||| |||||| |||| |||||| | Sbjct 15361 AAAATGCAAATTTTCGTCAAGACACTCACCGGCAAACACATCACACTCGAAGTCGAACCA 15302 Query 40747 ACCGACAGCGTGCAA-ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || || | | || ||| |||||| || || | ||||| || || ||||| | || Sbjct 15301 ACTGATCGTATCGAAGACG-TCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGA 15243 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| ||||||| ||| ||||| || || || || | ||| || | ||||| Sbjct 15242 TCAACAACGTCTCATCTTCGCTGGCAAGCAACTCGAAGATGGAAACACACTTCAAGACTA 15183 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || || || || Sbjct 15182 TTCAATCCAGAAGGACTCAACACTTCACCTCGT 15150 >seq959 Length=42966 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||||||| ||||| || || ||||| || || |||||| |||| |||||| | | Sbjct 25276 AAATGCAAATTTTCGTCAAGACACTCACTGGAAAGCACATCACACTCGAAGTCGAACCAA 25335 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | || |||| | ||||| | |||||||| || || || | || | Sbjct 25336 CCGACCGTATCGAAGATGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCCGATC 25395 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| ||||||| ||| || ||||| | || |||| || ||| | |||||| Sbjct 25396 AACAACGTCTCATCTTCGCCGGTAAACAATTAGAAGACGGAAATACACTCCAAGACTACT 25455 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || || || || Sbjct 25456 CAATCCAGAAGGACTCAACACTTCACCTCGT 25486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515209668444800