Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1024 96.9 5e-15 seq1146 86.0 9e-12 seq785 84.2 3e-11 >seq1024 Length=37034 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| |||||||| || ||||| ||||||||| | || |||||||| || ||| Sbjct 17075 AAAATCCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAA 17016 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| | || | |||| || || ||||| || ||||| | || Sbjct 17015 CAATTAGAAGATGGAAACACCCTCCAAGACTACTCCATCCAAAAGGACTCAACCCTCCAC 16956 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||| | || |||||||| Sbjct 16955 TTGGTTCTCCGTCTTCGTGGTGGTAT 16930 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| |||||||| || ||||| ||||||||| | || |||||||| || ||| Sbjct 17303 AAAATCCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAA 17244 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| | || | |||| || || ||||| || ||||| | || Sbjct 17243 CAATTAGAAGATGGAAACACCCTCCAAGACTACTCCATCCAAAAGGACTCAACCCTCCAC 17184 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||| | || |||||||| Sbjct 17183 TTGGTTCTCCGTCTTCGTGGTGGTAT 17158 Score = 89.7 bits (98), Expect = 8e-13 Identities = 113/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| ||||||||||| ||||| ||||||||| | || |||||||| || ||| Sbjct 16847 AAGATCCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAA 16788 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| || | || | |||| || || ||||| || ||||| | || Sbjct 16787 CAATTAGAAGACGGCAACACCCTCCAAGACTACTCCATCCAAAAGGATTCAACCCTCCAC 16728 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| | ||| | || |||||| || ||||| Sbjct 16727 TTGGTTCTTCGTCTTCGTGGTGGT-TTCTAAATT 16695 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| ||||||||||| ||||| ||||||||| | ||||| || || || ||| Sbjct 17531 AAGATCCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATCTTCGCTGGTAAA 17472 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| || | || | |||| || || ||||| || ||||| | || Sbjct 17471 CAATTAGAAGACGGCAACACCCTCCAAGACTACTCCATCCAAAAGGACTCAACCCTCCAC 17412 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||| | || |||||||| Sbjct 17411 TTGGTTCTCCGTCTTCGTGGTGGTAT 17386 >seq1146 Length=32655 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124543 AAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATA 124602 ||||||| || || || || || || || | ||||| | | || | | |||||| Sbjct 29550 AAATATTCATCAAAACTCTTACTGGTAAGCATGTAACTCTTTATGTTAACTCTCATGATA 29609 Query 124603 CAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAA 124662 |||| || | ||||| |||||||||||||||||||| |||||||| |||||||| | Sbjct 29610 GAATTATCGATGTGAAACACAAAATTCAAGATAAAGAAGGAATACCACCAGATCAACAGA 29669 Query 124663 GGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTC 124722 | | |||||| ||||| ||| | || ||| | || | |||||||| || Sbjct 29670 GATTAATTTTTAGCGGAAAGCAACTCGAAGATGGAAATACTCTTCAAGATTATTCCATCA 29729 Query 124723 AAAAAGAATCAACTTTGCATTTGGT 124747 |||| || || ||| | || || || Sbjct 29730 AAAAGGACTCCACTCTTCACTTAGT 29754 >seq785 Length=62999 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| ||||| || || ||| | || ||||| ||| Sbjct 32411 ATGCAGATCTTTGTGAAGACACTGACAGGGAAGCACATTACTCTGGAAGTTGAACCAACA 32470 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| | | || ||||| ||||| |||||||| || ||||| |||||| Sbjct 32471 GACAGAATCGAGGACGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 32530 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || ||||||||||| || ||| | || | |||| || Sbjct 32531 CAACGTTTGATTTTCGCCGGAAAACAATTGGAAGATGGAAACACCCTCCAAGACTACTCA 32590 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || |||||||| |||||| | || | || | ||| | || || |||| Sbjct 32591 ATCCAAAAAGATTCAACTCTCCACCTTGTGCTTCGTCTCCGTGGCGGTA 32639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442024064000