Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq959 93.3 4e-14 seq548 89.7 5e-13 seq788 82.4 7e-11 seq576 82.4 7e-11 >seq959 Length=42966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || || || ||||| |||| || ||||| || Sbjct 25278 ATGCAAATTTTCGTCAAGACACTCACTGGAAAGCACATCACACTCGAAGTCGAACCAACC 25337 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| || ||||| |||||| | ||| ||||| ||||| | || ||||| || Sbjct 25338 GACCGTATCGAAGATGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCCGATCAA 25397 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||| || ||||| || ||||| || |||||| Sbjct 25398 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGAC 25433 >seq548 Length=109954 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||||||| || || || | || |||||||| | Sbjct 39931 ATGCAGATCTTCGTAAAGACGCTGACAGGGAAGCACATTACTCTGGAAGTTGAACCAACA 39872 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||||| |||| ||||| | ||| ||||||||||| | || || || || Sbjct 39871 GACAGCATCGAGGACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAA 39812 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| ||||| ||||||||| | || | ||||| Sbjct 39811 CAACGTTTGATCTTCGCTGGAAAACAATTGGAAGACGGCAACACCCTCCAAGATTACTCA 39752 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGAA 31424 |||||||| || || ||||| || || || ||| | || | || |||| || Sbjct 39751 ATTCAAAAGGATTCAACTCTCCACCTTGTGCTTCGTCTCCGTGGTGGTAAAA 39700 >seq788 Length=62525 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| ||||| || || |||||| ||||| |||| || ||||| Sbjct 15361 AAAATGCAAATTTTCGTCAAGACACTCACCGGCAAACACATCACACTCGAAGTCGAACCA 15302 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | || || ||||| ||||| | || ||||||||||| | || || || Sbjct 15301 ACTGATCGTATCGAAGACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGAT 15242 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || || ||||| || ||||||||||| || | ||||| Sbjct 15241 CAACAACGTCTCATCTTCGCTGGCAAGCAACTCGAAGA 15204 >seq576 Length=101662 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| |||||||||||||| || || ||| ||||| | || || ||||| Sbjct 65857 AAAGATGCAAATCTTCGTAAAGACTCTTACTGGAAAACACATCACACTTGAAGTCGAACC 65798 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 | || || |||| |||||| | || |||||||| || | || || || Sbjct 65797 AACAGATCGTATCGAGGACGTCAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGA 65738 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| |||||| |||| ||||| || || || | |||||| | || | || || Sbjct 65737 CCAACAGCGTTTAATCTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCAGGACTA 65678 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || || ||||| | || ||| | || | ||||||| Sbjct 65677 CTCCATTCAAAAGGACTCTACACTTCACTTAGTCCTTCGTCTTCGTGGCGGTA 65625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758153321600