Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1164 102 1e-16 >seq1164 Length=31805 Score = 102 bits (112), Expect = 1e-16 Identities = 189/275 (69%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 80990 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 81049 || || ||| | ||||||| ||| || || | || | |||||||| | ||| | | Sbjct 10334 GTTATTGGTGTTGATGAAGCACAATTTTTCTCGGATGTCGTTGAATTTTCTGAAAGGTTA 10275 Query 81050 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCGCTCGATGGGACATTTCAACGTAGACCG 81109 |||||| | ||||| | ||||| || || | |||||||| |||||||| | | ||| Sbjct 10274 GCAAACAATGGAAAGGTTGTTATCGTTGCAGGCCTCGATGGAACATTTCAGAGAAAACCA 10215 Query 81110 TTTAATAATATTTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGTG 81169 || ||||||||||||| ||| | || |||||| || |||||| | ||||| Sbjct 10214 TTCGGCCATATTTTGAATCTAATTTCTCGATGTGAAATTCTGACCAAACTATCGGCAGTT 10155 Query 81170 TGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTAGGTGCAGAA-ACCGAGAT 81228 |||| || | | ||| || |||||||| ||||| | || | || || || || Sbjct 10154 TGTACAGAAACCGGAAGGGATGCGCCCTTTTCTCAACGAAT-TGTAAATAACACGGAAAT 10096 Query 81229 AGAAATAATAGGAGGTAATGATATGTATCAATCTG 81263 ||| |||| ||||| ||| ||||||| | ||| Sbjct 10095 AGAGTTAATTGGAGGCGCTGACATGTATCGAGCTG 10061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629805948374400