Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq959 84.2 2e-11 seq187 84.2 2e-11 seq1024 82.4 8e-11 >seq959 Length=42966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 |||||| | ||||||||| || |||| |||||||| |||||||| || || |||||||| Sbjct 25433 GTCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTT 25374 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||||| ||| | | ||| | ||| || ||||| ||||| | || | Sbjct 25373 GTCTTGGATTTTGGCTTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCGAGTGTGAT 25314 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||| || ||||| |||||||| Sbjct 25313 GTGCTTTCCAGTGAGTGTCTTGACGAAAATTTGCAT 25278 >seq187 Length=9559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || |||||||| ||| ||| || Sbjct 4665 CCACCACGGAGACGAAGAACCAAGTGAAGGGTTGAGTCTTTTTGGATGGAGTAGTCTTGA 4606 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||||||||| ||||| || |||| |||||||| ||||| || || Sbjct 4605 AGGGTGTTTCCATCTTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGG 4546 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||| || ||||| ||| Sbjct 4545 ATACCTTCCTTGTCTTGGATCTTNGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACT 4486 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||| || || | ||||| ||||| ||||||||| Sbjct 4485 TCAAGNGTGATGTGCTTTCCTGTGAGGGTTTTGACGAAGATTTGCATA 4438 >seq1024 Length=37034 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || || || ||||| ||| ||| || Sbjct 16705 CCACCACGAAGACGAAGAACCAAGTGGAGGGTTGAATCCTTTTGGATGGAGTAGTCTTGG 16764 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | |||||| | ||||||||||||| | || |||||||| ||||| || || Sbjct 16765 AGGGTGTTGCCGTCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGG 16824 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || ||| | | ||| | ||| || ||||| ||| Sbjct 16825 ATACCTTCTTTGTCTTGGATCTTGGCTTTGACATCTTCGATACGGTCTGTTGGTTCGACT 16884 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||| || || | ||||| ||||| ||||||||| Sbjct 16885 TCGAGGGTGATGTGCTTTCCTGTGAGGGTTTTGACGAAGATTTGCATA 16932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005020233600