Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq576 102 6e-17 seq548 96.9 3e-15 seq1024 87.8 1e-12 seq959 87.8 1e-12 seq785 87.8 1e-12 seq827 82.4 6e-11 seq716 82.4 6e-11 >seq576 Length=101662 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| ||||| ||||| ||| |||||| || | | ||||||| Sbjct 65416 AACCAAGTGGAGGGTTGAATCCTTTTGGATGGAGTAATCTTGAAGGGTGTTTCCGTCTTC 65475 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||||||||| | |||||||| ||||| || ||||||||| || ||||| Sbjct 65476 CAATTGTTTGCCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTCTTG 65535 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| ||| ||| || | || | || || || | |||||| || Sbjct 65536 AATTTTGGCCTTAACATCTTCAATTCTGTCAGTTGGCTCGACTTCAAGTGTAATGTGCTT 65595 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| ||||| |||||| Sbjct 65596 GCCAGTAAGGGTCTTTACGAAAATCTGCATA 65626 >seq548 Length=109954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || ||||| ||||| || |||||| || | | ||||||| |||||| Sbjct 39729 TGGAGAGTTGAATCCTTTTGAATTGAGTAATCTTGGAGGGTGTTGCCGTCTTCCAATTGT 39788 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||||||||||||| || |||||||||||| ||||| |||||| Sbjct 39789 TTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTG 39848 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || || ||| | || | ||| || || | |||||| || |||||| Sbjct 39849 GCCTTGACGTCCTCGATGCTGTCTGTTGGTTCAACTTCCAGAGTAATGTGCTTCCCTGTC 39908 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| Sbjct 39909 AGCGTCTTTACGAAGATCTGCAT 39931 >seq1024 Length=37034 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || || ||||| ||| ||| || || | | | ||||| Sbjct 16950 AACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTTCCATCTTC 17009 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| ||||| | || | ||||||||| || |||||||||||||||||| Sbjct 17010 TAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 17069 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| ||| ||| || ||| | ||| || || | ||| ||| || Sbjct 17070 GATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATGTGCTT 17129 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || || ||||||||| Sbjct 17130 TCCTGTGAGTGTCTTAACGAAGATTTGCATA 17160 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || || ||||| ||| ||| || || | | | ||||| Sbjct 17178 AACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTTCCATCTTC 17237 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| ||||| | || | ||||||||| || |||||||||||||||||| Sbjct 17238 TAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 17297 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| ||| ||| || ||| | ||| || || | ||| ||| || Sbjct 17298 GATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATGTGCTT 17357 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || || ||||||||| Sbjct 17358 TCCTGTGAGTGTCTTAACGAAGATTTGCATA 17388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| ||||| ||||| ||| ||| || || | | ||||||| Sbjct 16722 AACCAAGTGGAGGGTTGAATCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGCCGTCTTC 16781 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| ||||| | || | ||||||||| || ||| || ||||||||||| Sbjct 16782 TAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 16841 Query 15274 AATTTTGCTCTTTACAATTTC--TATGGTATCGCTATT--TTCTACATCTAAGGTAATGG 15329 || ||| || ||| ||| || ||| || || ||| || || | ||| ||| Sbjct 16842 GATCTTGGCTTTGACATCTTCGATACGGT----CTGTTGGTTCGACTTCGAGGGTGATGT 16897 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || ||||| || || ||||||||| Sbjct 16898 GCTTTCCTGTGAGGGTTTTGACGAAGATTTGCATA 16932 >seq959 Length=42966 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 |||||||||||||||| || ||| | || | ||||||||| ||| |||||||||||||| Sbjct 25434 CGTCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTT 25375 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 |||| |||||| || ||| ||| || ||| | ||| || || | || | Sbjct 25374 TGTCTTGGATTTTGGCTTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCGAGTGTGA 25315 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATA 15374 || || || || || || || || ||||||||||| | |||| || Sbjct 25314 TGTGCTTTCCAGTGAGTGTCTTGACGAAAATTTGCATTTACGAAAGTA 25267 >seq785 Length=62999 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || ||||||||||| || ||| || || | | | ||||| |||||| Sbjct 32613 TGGAGAGTTGAATCTTTTTGGATTGAGTAGTCTTGGAGGGTGTTTCCATCTTCCAATTGT 32554 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||||||||||||| || |||||||||||||||||| |||||| Sbjct 32553 TTTCCGGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATTTTG 32494 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || || || | || | ||| || || | |||||| || |||||| Sbjct 32493 GCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTAATGTGCTTCCCTGTC 32434 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 32433 AGTGTCTTCACAAAGATCTGCAT 32411 >seq827 Length=184754 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || ||||||||||| || |||||| || | | ||||||| |||||| Sbjct 149056 TGGAGAGTTGAATCTTTTTGGATTGAGTAATCTTGGAGGGTGTTTCCGTCTTCCAATTGT 148997 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||||||||||||| || |||||||||||| ||||| |||||| Sbjct 148996 TTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTG 148937 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || || || | || | ||| || || | || ||| || || ||| Sbjct 148936 GCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTGATGTGCTTCCCAGTC 148877 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 148876 AGCGTCTTCACAAAGATCTGCAT 148854 >seq716 Length=195740 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || ||||| ||| |||||| ||| | | | ||||| | ||| Sbjct 164626 TGGAGTGTTGAGTCCTTTTGAATGGAGTAATCTTGAAGAGTGTTTCCATCTTCGAGTTGC 164567 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | || |||||||||||||| |||||||||||| || || ||||||| Sbjct 164566 TTTCCAGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGAATTTTG 164507 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| ||| || ||| | ||| || || | || || || ||||| Sbjct 164506 GCCTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCAAGTGTGATATGCTTGCCTGTG 164447 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || |||||||| Sbjct 164446 AGTGTTTTCACGAAGATTTGCAT 164424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362172667192680