Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq582 89.7 4e-13 >seq582 Length=225330 Score = 89.7 bits (98), Expect = 4e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||||||||||||||||||||| || || || || |||| | ||||| | Sbjct 127298 CATCCTCCAATTGTTTTCCTGCAAATATCAAACGCTGTTGATCAGGAGGAATTCCTTCCT 127239 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| || || ||||| ||| ||||| ||||| || || | ||||| Sbjct 127238 TATCCTGGATCTTAGCCTTGACGTCCTCAATGCGATCTGTGGGCTCGACCTCAAGCGTAA 127179 Query 44085 T-TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||| ||||| | ||||||||| || |||||||| Sbjct 127178 TATGCTTT-CCGGTCAGAGTCTTCACGAAGATTTGCAT 127142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354771200699040