Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq959 114 3e-20 seq710 114 3e-20 seq582 114 3e-20 seq393 114 3e-20 seq576 109 1e-18 seq1024 107 4e-18 seq639 102 2e-16 seq785 87.8 4e-12 seq548 87.8 4e-12 seq176 87.8 4e-12 seq1146 84.2 5e-11 >seq959 Length=42966 Score = 114 bits (126), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || || ||||| || ||||| || || | |||||| Sbjct 25489 AGAACGAGGTGAAGTGTTGAGTCCTTCTGGATTGAGTAGTCTTGGAGTGTATTTCCGTCT 25430 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| |||||| || || || || || | |||||||| || || ||||||||||| || Sbjct 25429 TCTAATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCT 25370 Query 104468 TGAATCTTTGCTTTTACATTTTC--TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 || || || ||||| |||| ||| ||||| ||| | ||||| || || ||||| || Sbjct 25369 TGGATTTTGGCTTTGACATCTTCGATACGG--TCGGTTGGTTCGACTTCGAGTGTGATGT 25312 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 ||| ||||| ||||| || || || || ||||||| Sbjct 25311 GCTTTCCAGTGAGTGTCTTGACGAAAATTTGCATTT 25276 >seq710 Length=73582 Score = 114 bits (126), Expect = 3e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| | || || | || | ||| || ||||| | || || ||||| ||||| Sbjct 11832 TTCTTTTTACCACCACGAAGACGAAGCACAAGATGAAGGGTCGAATCTTTTTGAATTGAG 11773 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || || | || || |||| ||||||||| ||||| || | | ||||||| Sbjct 11772 TAGTCTTGGAGGGTGTTTCCATCCTCTAATTGTTTTCCTGCAAATATCAAACGCTGTTGA 11713 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || |||||||| || ||||| ||||| ||||| || | || | | ||| | Sbjct 11712 TCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTCCTCAATGCGATCTGTT 11653 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| ||| ||||| || || || ||||| || ||||| Sbjct 11652 GGCTCGACCTCAAGCGTAATGTGCTTCCCAGTCAGAGTCTTAACAAAGATTTGCAT 11597 >seq582 Length=225330 Score = 114 bits (126), Expect = 3e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| | || || | || | ||| || || || | ||||| ||||||||||| | Sbjct 127377 TTCTTTTTACCGCCGCGGAGACGAAGAACGAGGTGAAGCGTAGAGTCTTTCTGAATTGAA 127318 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || || || || | || || || | ||||||||| ||||| || | | ||||||| Sbjct 127317 TAATCTTGAAGGGTGTTTCCATCCTCCAATTGTTTTCCTGCAAATATCAAACGCTGTTGA 127258 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| |||||||| |||||||| ||||| || || || | || | | ||| | Sbjct 127257 TCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTCCTCAATGCGATCTGTG 127198 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || |||||| ||| || || || || || || || || ||||| Sbjct 127197 GGCTCGACCTCAAGCGTAATATGCTTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 127142 >seq393 Length=120711 Score = 114 bits (126), Expect = 3e-20 Identities = 123/161 (76%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||||| ||| || || || || || || | |||||||| || || ||||||||| Sbjct 67540 CCGTCTTCTAATTGCTTACCGGCGAAGATGAGACGTTGTTGATCTGGTGGAATTCCTTCT 67481 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC--TACGGTATCGCTAGGTTCTACCTCTAGTG 104519 || || |||||||| ||||| || | ||| |||| |||| | || || || || |||| Sbjct 67480 TTGTCTTGAATCTTAGCTTTAACGTCTTCGATACG--ATCGGTTGGCTCGACTTCGAGTG 67423 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||| || |||||||| || || || || |||||| Sbjct 67422 TAATATGCTTTCCTGTAAGTGTCTTGACGAAGATTTGCATT 67382 >seq576 Length=101662 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| | |||||| ||||||||||| | | ||||||||| || || ||||| || Sbjct 65468 CCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATTCCCTCC 65527 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || ||||| || || || |||| ||| | | || | || || || || |||||| Sbjct 65528 TTGTCTTGAATTTTGGCCTTAACATCTTCAATTCTGTCAGTTGGCTCGACTTCAAGTGTA 65587 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||| |||||||| || ||||| || |||||||| Sbjct 65588 ATGTGCTTGCCAGTAAGGGTCTTTACGAAAATCTGCAT 65625 >seq1024 Length=37034 Score = 107 bits (118), Expect = 4e-18 Identities = 121/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||||| |||||| ||||||||||| || | |||||||| || || || |||||| Sbjct 16774 CCGTCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCT 16833 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC--TACGGTATCGCTAGGTTCTACCTCTAGTG 104519 || || || ||||| ||||| |||| ||| ||||| || | ||||| || || || | Sbjct 16834 TTGTCTTGGATCTTGGCTTTGACATCTTCGATACGG--TCTGTTGGTTCGACTTCGAGGG 16891 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||| || || || ||||| || || || ||||| Sbjct 16892 TGATGTGCTTTCCTGTGAGGGTTTTGACGAAGATTTGCAT 16931 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||||| |||||| ||||||||||| || | |||||||| || || ||||||||| Sbjct 17002 CCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCT 17061 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC--TACGGTATCGCTAGGTTCTACCTCTAGTG 104519 || || || || || || || |||| ||| |||| ||| | ||||| || || || | Sbjct 17062 TTGTCTTGGATTTTAGCCTTGACATCTTCGATACG--ATCTGTTGGTTCGACTTCAAGGG 17119 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||| || || ||||| || || || || ||||| Sbjct 17120 TGATGTGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCAT 17159 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||||| |||||| ||||||||||| || | |||||||| || || ||||||||| Sbjct 17230 CCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCT 17289 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC--TACGGTATCGCTAGGTTCTACCTCTAGTG 104519 || || || || || || || |||| ||| |||| ||| | ||||| || || || | Sbjct 17290 TTGTCTTGGATTTTAGCCTTGACATCTTCGATACG--ATCTGTTGGTTCGACTTCAAGGG 17347 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||| || || ||||| || || || || ||||| Sbjct 17348 TGATGTGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCAT 17387 >seq639 Length=86550 Score = 102 bits (112), Expect = 2e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| | || || | || | ||| || ||||| | || || ||||| || || Sbjct 86346 TTCTTTTTACCACCACGGAGACGAAGCACAAGATGGAGAGTCGAGTCTTTTTGGATTGAG 86287 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || || | || || |||| ||||||||| ||||| || | | ||||||| Sbjct 86286 TAGTCTTGGAGGGTGTTTCCATCCTCTAATTGTTTTCCTGCAAATATCAAACGCTGTTGA 86227 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || |||||||| || ||||| ||||| || || || | || | | ||| | Sbjct 86226 TCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTCCTCAATGCGATCTGTT 86167 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||| ||||| || || || ||||| || ||||| Sbjct 86166 GGCTCGACTTCAAGCGTAATGTGCTTCCCAGTCAGAGTCTTAACAAAGATTTGCAT 86111 >seq785 Length=62999 Score = 87.8 bits (96), Expect = 4e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| | || || | || | ||| || || || | || || ||||| || || Sbjct 32646 TTCTTTTTACCGCCACGGAGACGAAGCACAAGGTGGAGAGTTGAATCTTTTTGGATTGAG 32587 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || || | || ||||| | ||||||||| || ||||| | | |||||| Sbjct 32586 TAGTCTTGGAGGGTGTTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAAACGTTGTTGA 32527 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || || ||||||||||| || || || || || || || | || | | || | Sbjct 32526 TCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTT 32467 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||| || || ||||| || ||||| |||||||| Sbjct 32466 GGTTCAACTTCCAGAGTAATGTGCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 32411 >seq548 Length=109954 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| | |||||||||||| || || | | |||||||| || || |||||||| Sbjct 39774 CCGTCTTCCAATTGTTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCC 39833 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || || || || || || | || | | | || | ||||| || || || ||| Sbjct 39834 TTGTCTTGGATTTTGGCCTTGACGTCCTCGATGCTGTCTGTTGGTTCAACTTCCAGAGTA 39893 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||| || || || || ||||| || |||||||| Sbjct 39894 ATGTGCTTCCCTGTCAGCGTCTTTACGAAGATCTGCAT 39931 >seq176 Length=130081 Score = 87.8 bits (96), Expect = 4e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| | || || | || | ||| || || || | || || || || ||||| Sbjct 85237 TTCTTTTTACCACCACGGAGACGAAGCACAAGGTGGAGAGTTGAGTCCTTTTGAATTGAG 85178 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || || | |||||||| | ||||||||| || || || | | |||||| Sbjct 85177 TAGTCTTGGAGGGTGTTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGA 85118 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || || ||||||||||| || || || || || || || | || | | || | Sbjct 85117 TCTGGGGGGATTCCTTCTTTGTCTTGGATTTTAGCCTTGACGTCCTCGATTCTGTCTGTT 85058 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| ||| || || || || || ||||| |||||||| Sbjct 85057 GGTTCAACTTCCAGTGTAATGTGCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 85002 >seq1146 Length=32655 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || ||||| ||||| ||||| |||||||| ||||||||||| || ||| Sbjct 29712 AGAGTATTTCCATCTTCGAGTTGCTTTCCGCTAAAAATTAATCTCTGTTGATCTGGTGGT 29653 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACAT 104486 |||||||||||||| ||||| || ||| |||| Sbjct 29652 ATTCCTTCTTTATCTTGAATTTTGTGTTTCACAT 29619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151376566607840