Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq827 104 2e-17 seq785 98.7 9e-16 seq576 95.1 1e-14 seq176 91.5 1e-13 seq548 86.0 6e-12 seq1024 84.2 2e-11 >seq827 Length=184754 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||||||| | ||||| || | ||| |||||||| ||||| ||||| ||| Sbjct 149008 TCTTCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTG 148949 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||||||| | ||| |||| | | || || || | |||||| Sbjct 148948 TCTTGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTGATG 148889 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || ||||||||||||||||| Sbjct 148888 TGCTTCCCAGTCAGCGTCTTCACAAAGATCTGCAT 148854 >seq785 Length=62999 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 94844 GTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATA 94903 ||||| ||| |||| ||||||||| | || || || | ||| |||||||| ||||| Sbjct 32574 GTGTTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAAACGTTGTTGATCTGGTGGAATT 32515 Query 94904 CCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCA 94963 ||||||||||| | ||||| ||||||||| | ||| |||| | | || || || Sbjct 32514 CCTTCTTTGTCTTGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCC 32455 Query 94964 ATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||| || || || || || ||||||||||||||||| Sbjct 32454 AGAGTAATGTGCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 32411 >seq576 Length=101662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || ||||| | ||||| |||||||| | | || || | ||||| || || Sbjct 65645 ACTAAGTGAAGTGTAGAGTCCTTTTGAATGGAGTAGTCCTGAAGTGTGTTTCCGTCTTCG 65704 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| | |||||||| | || || ||||| ||||| || || ||||| | Sbjct 65705 AGTTGCTTTCCGGCGAAGATTAAACGCTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTGG 65764 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || |||||| | ||| | || | | ||||| |||| |||||| |||| Sbjct 65765 ATCTTGGCTTTGACGTCCTCGATACGATCTGTTGGTTCGACTTCAAGTGTGATGTGTTTT 65824 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACAT 95018 ||||||||||| || || ||||| ||||| ||| || || Sbjct 65825 CCAGTAAGAGTCTTTACGAAGATTTGCATCTTTAAAAAAT 65864 >seq176 Length=130081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||||||| | ||||| || | ||| |||||||| || || ||||||||| Sbjct 85156 TCTTCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCTTTG 85097 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||||||| | ||| |||| | | || || || | || ||| Sbjct 85096 TCTTGGATTTTAGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGTGTAATG 85037 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || |||||||||||||| Sbjct 85036 TGCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 85002 >seq548 Length=109954 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||| || |||||||| | ||||| | |||||| || || Sbjct 39722 CACAAGGTGGAGAGTTGAATCCTTTTGAATTGAGTAATCTTGGAGGGTGTTGCCGTCTTC 39781 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||||| | ||||| || | ||| |||||||| ||||| ||||| ||||| | Sbjct 39782 CAATTGTTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTG 39841 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||||||||| | ||| |||| | | || || || | || ||| || Sbjct 39842 GATTTTGGCCTTGACGTCCTCGATGCTGTCTGTTGGTTCAACTTCCAGAGTAATGTGCTT 39901 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 39902 CCCTGTCAGCGTCTTTACGAAGATCTGCAT 39931 >seq1024 Length=37034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || |||||||| | | || || | ||||| ||| || Sbjct 16951 ACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTTCCATCTTCT 17010 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || |||| || | | ||| |||||||| ||||| ||||||||||| | Sbjct 17011 AATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 17070 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | ||| | || | | ||||| |||| |||||| ||| Sbjct 17071 ATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATGTGCTTT 17130 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||| Sbjct 17131 CCTGTGAGTGTCTTAACGAAGATTTGCAT 17159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || |||||||| | | || || | ||||| ||| || Sbjct 17179 ACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTTCCATCTTCT 17238 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || |||| || | | ||| |||||||| ||||| ||||||||||| | Sbjct 17239 AATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 17298 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | ||| | || | | ||||| |||| |||||| ||| Sbjct 17299 ATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATGTGCTTT 17358 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||| Sbjct 17359 CCTGTGAGTGTCTTAACGAAGATTTGCAT 17387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || |||||||| | | || || | |||||| || || Sbjct 17407 ACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGCCGTCTTCT 17466 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | ||||| | | ||| |||||||| || |||||||||||||| | Sbjct 17467 AATTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 17526 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || |||||| | ||| | ||| | | ||||| || | |||||| ||| Sbjct 17527 ATCTTGGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCGAGGGTGATGTGTTTG 17586 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||| ||||| Sbjct 17587 CCTGTGAGGGTTTTGACGAAGATTTGCAT 17615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448282906612800