Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1304 98.7 2e-16 seq661 95.1 2e-15 seq1182 91.5 2e-14 seq1171 87.8 3e-13 seq1007 84.2 3e-12 seq614 82.4 1e-11 >seq1304 Length=143907 Score = 98.7 bits (108), Expect = 2e-16 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||| | | | | | || || ||||||||||| || || ||||||||||| Sbjct 125630 GCCAAGCGCCATAGAAAAGTTATGCGTGAAAACATCCAAGGTATTACAAAGCCAGCTATT 125571 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| | ||||| ||||| ||| | || || |||| ||||| || Sbjct 125570 CGCCGTCTCGCTCGCAGAGGTGGTGTCAAACGTATTTCAGGTGATATCTACGAAGAAGTT 125511 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||| | | || |||| || || || || || || Sbjct 125510 CGTGGCGTTCTTCGTCACTTCTTAGAAGGAGTCATCCGCGACTCTGTCACATACACAGAA 125451 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | | ||||| || || | |||||| |||| |||||| | ||||| ||||| Sbjct 125450 CACGCCAGAAGGAAGACAGTTACAGCAATGGATGTCGTTTATGCACTCAAACGCCAAGGA 125391 Query 16673 CGTAAGATTTATGGTTT 16689 | | |||||||||| Sbjct 125390 AGAACACTTTATGGTTT 125374 >seq661 Length=88103 Score = 95.1 bits (104), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| || || ||||||||||| || ||||| |||||| | ||||| Sbjct 26604 CGTGAAAACATCCAAGGTATTACAAAGCCAGCTATTCGCCGTCTCGCTCGTAGAGGTGGT 26545 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| | || || |||| ||||| |||||| ||| | |||| | Sbjct 26544 GTCAAACGTATTTCAGGTGATATCTACGAAGAAGTTCGTGGTGTCCTCCGTCACTTCTTA 26485 Query 16577 AAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 | || |||| || || || || || || || ||||| | | | ||||| || || Sbjct 26484 GAAGGAGTCATCCGCGACTCTGTTACA-TACACAGAACACGCCAGAAGGAAGACAGTTAC 26426 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 | |||||| |||| |||||| | || || ||||| | | |||||||||| Sbjct 26425 AGCAATGGATGTCGTTTATGCACTCAAGCGCCAAGGAAGAACACTTTATGGTTT 26372 >seq1182 Length=151216 Score = 91.5 bits (100), Expect = 2e-14 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| || || ||||||||||| || ||||| ||||| | ||||| Sbjct 143738 CGTGAAAACATCCAAGGTATTACAAAGCCAGCTATTCGCCGTCTCGCTCGCAGAGGTGGT 143679 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| | || || |||| ||||| |||||| ||| | |||| | Sbjct 143678 GTCAAACGTATTTCAGGTGATATCTACGAAGAAGTTCGTGGCGTTCTTCGTCACTTCTTG 143619 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | || |||| || || || || || || ||||| | | | ||||| || || Sbjct 143618 GAAGGAGTCATCCGCGACTCTGTCACATACACAGAACACGCCAGAAGGAAGACAGTTACA 143559 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 | |||||| |||| ||||| | ||||| ||||| | | |||||||||| Sbjct 143558 GCTATGGATGTCGTTTATGCCCTCAAACGCCAAGGAAGAACACTTTATGGTTT 143506 >seq1171 Length=151637 Score = 87.8 bits (96), Expect = 3e-13 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| || || ||||||||||| || ||||| |||||| | ||||| Sbjct 147834 CGTGAAAACATCCAAGGTATTACAAAGCCAGCTATTCGCCGTCTCGCTCGTAGAGGTGGT 147893 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| | || || |||| ||||| |||||| ||| | |||| | Sbjct 147894 GTCAAACGTATTTCAGGTGATATCTACGAAGAAGTTCGTGGTGTCCTCCGTCACTTCTTA 147953 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | || |||| || || || || || || ||||| | | | ||||| || || Sbjct 147954 GAAGGAGTCATCCGCGACTCTGTCACATACACAGAACACGCCAGAAGGAAGACAGTTACA 148013 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 | |||||| |||| ||||| | || || || || | | |||||||||| Sbjct 148014 GCAATGGATGTCGTTTATGCCCTCAAGCGCCAGGGAAGAACACTTTATGGTTT 148066 >seq1007 Length=39590 Score = 84.2 bits (92), Expect = 3e-12 Identities = 185/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| || || ||||||||||| || ||||| ||||| | || || Sbjct 23469 CGTGAGAACATCCAAGGTATTACAAAGCCAGCTATTCGCCGTCTCGCTCGCAGAGGCGGT 23410 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| | || || |||| ||||| |||||| ||| | |||| | Sbjct 23409 GTCAAACGTATTTCAGGTGATATCTACGAAGAAGTTCGTGGCGTTCTTCGTCACTTCTTA 23350 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | || |||| || || || || || || ||||| | | | ||||| || || Sbjct 23349 GAAGGAGTCATCCGCGACTCTGTCACATACACAGAACACGCCAGAAGGAAGACAGTTACA 23290 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| |||| ||||| | || || ||||| | | |||||||||| || | Sbjct 23289 GCAATGGATGTCGTTTATGCCCTCAAGCGCCAAGGAAGAACACTTTATGGTTTCTAAATT 23230 Query 16697 TAATCTTCTAATCAAACTTCGAAT-GGAAGAATT 16729 || ||| |||| ||| | |||| || ||||| Sbjct 23229 TA--CTT-TAATAAAAATGTGAATAAGATGAATT 23199 >seq614 Length=90617 Score = 82.4 bits (90), Expect = 1e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| || || ||||||||||| || ||||| |||||| | ||||| Sbjct 73766 CGTGAAAACATCCAAGGTATTACAAAGCCAGCTATTCGCCGTCTCGCTCGTAGAGGTGGT 73707 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| | || || |||| ||||| |||||| ||| | |||| | Sbjct 73706 GTCAAACGTATTTCAGGTGATATCTACGAAGAAGTTCGTGGTGTCCTCCGTCACTTCTTA 73647 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | || |||| || || || || || || ||||| | | | ||||| || || Sbjct 73646 GAAGGAGTCATCCGCGACTCTGTCACATACACAGAACACGCCAGAAGGAAGACAGTTACA 73587 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 | |||||| | || ||||| | || || || || | | |||||||||| Sbjct 73586 GCTATGGATGTTGTTTATGCCCTCAAGCGCCAGGGAAGAACACTTTATGGTTT 73534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073846825640