Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1164 100 4e-16 >seq1164 Length=31805 Score = 100 bits (110), Expect = 4e-16 Identities = 183/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 80955 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 81014 || || ||| | ||||||| ||| || || | || | |||||||| | ||| | | Sbjct 10334 GTTATTGGTGTTGATGAAGCACAATTTTTCTCGGATGTCGTTGAATTTTCTGAAAGGTTA 10275 Query 81015 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCG 81074 |||||| | ||||| | ||||| || || | |||||||| |||||||| | ||||| Sbjct 10274 GCAAACAATGGAAAGGTTGTTATCGTTGCAGGCCTCGATGGAACATTTCAGAGAAAACCA 10215 Query 81075 TTTAATAATATTTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGTG 81134 || ||||||||||||| ||| | || |||||| || |||||| | || || Sbjct 10214 TTCGGCCATATTTTGAATCTAATTTCTCGATGTGAAATTCTGACCAAACTATCGGCAGTT 10155 Query 81135 TGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTGGGTGAGGAAACCGAGATA 81194 |||| || | | ||| || |||||||| ||||| | | | | || || ||| Sbjct 10154 TGTACAGAAACCGGAAGGGATGCGCCCTTTTCTCAACGAATTGTAAATAACACGGAAATA 10095 Query 81195 GAAATAATAGGAGGTAATGATATGTATC 81222 || |||| ||||| ||| ||||||| Sbjct 10094 GAGTTAATTGGAGGCGCTGACATGTATC 10067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935675476800