Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq959 95.1 1e-14 seq1149 91.5 1e-13 seq187 91.5 1e-13 seq788 89.7 5e-13 seq1024 86.0 6e-12 >seq959 Length=42966 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 26767 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAA 26826 |||||||| | || || || ||| | |||||||| ||||| ||||| | ||| ||| Sbjct 25276 AAATGCAAATTTTCGTCAAGACACTCACTGGAAAGCACATCACACTCGAAGTCGAACCAA 25335 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 |||| ||||| | |||||| || || ||||||||||| || || ||||||| Sbjct 25336 CCGACCGTATCGAAGATGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCCGATC 25395 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 ||||| | ||||| | || ||| |||||| | ||||| Sbjct 25396 AACAACGTCTCATCTTCGCCGGTAAACAATTAGAAGA 25432 >seq1149 Length=154106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || |||||||| ||||||||| |||||| ||||| | ||| ||| Sbjct 59806 ATGCAGATTTTCGTGAAAACATTGACTGGAAAACACATCACCCTCGAAGTCGAACCAACA 59865 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || | || ||| ||||| ||||| || || || || || |||||| Sbjct 59866 GATCGTATTGAAGACGTGAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGATCAA 59925 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGA-TGATAGAAACGTCAGCGACTATAA 26947 ||| | || |||| || ||| || ||||||||||| || | | || ||| ||||| Sbjct 59926 CAACGTCTTATTTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCA-AGACTACTC 59984 Query 26948 CATTCAAAAAGAATCTACTATCCA 26971 ||||||||| || || || |||| Sbjct 59985 CATTCAAAAGGATTCAACCCTCCA 60008 >seq187 Length=9559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | ||||| || || | || || || |||||| ||||| | ||| || Sbjct 4208 AAGATGCAAATCTTTGTTAAGACCCTTACAGGCAAGCACATCACCCTCGAAGTCGAACCA 4267 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||| |||||| | |||||| ||||| ||||| ||||| || || || ||| Sbjct 4268 ACAGACCGTATCGAGGACGTCAAAGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGAT 4327 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || || | || ||| || ||||||||||| | | | | || ||||| Sbjct 4328 CAACAACGTCTTATCTTCGCCGGTAAGCAACTCGAAGACGGCAACACCCTCCAAGACTAC 4387 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||| || ||||| | || || ||||| Sbjct 4388 TCCATCCAAAAGGACTCTACACTTCACCTTGTCCT 4422 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || ||||| ||||| | ||| | ||| ||| Sbjct 4439 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGCACATCACNCTTGAAGTCGAACCAACA 4498 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| |||||| | |||||| ||||| ||||| ||||| || || || |||||| Sbjct 4499 GACCGTATCGAGGACGTCAAAGCNAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAA 4558 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT-GATAGAAACGTCAGCGACTATAA 26947 ||| | || || | || ||| || |||||||||||| || | | | ||| ||||| Sbjct 4559 CAACGTCTTATCTTCGCCGGTAAGCAACTCGAAGATGGAAACACCCTTCA-AGACTACTC 4617 Query 26948 CATTCAAAAAGAATCTAC 26965 ||| |||||||| || || Sbjct 4618 CATCCAAAAAGACTCAAC 4635 >seq788 Length=62525 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26754 TTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATC 26813 |||| || || ||||||||| | || || || ||| | || || ||| ||||| || Sbjct 15373 TTTTTCTCGAAGAAAATGCAAATTTTCGTCAAGACACTCACCGGCAAACACATCACACTC 15314 Query 26814 GAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGG 26873 ||| | ||| ||| || ||||| | ||||| ||||| ||||| ||||| Sbjct 15313 GAAGTCGAACCAACTGATCGTATCGAAGACGTCAAGGCCAAGATCCAAGACAAGGAAGGT 15254 Query 26874 ATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT-GATAGAAA 26932 || || || ||||||||| | ||||| | || ||||| |||||||||||| || | | | Sbjct 15253 ATCCCACCAGATCAACAACGTCTCATCTTCGCTGGCAAGCAACTCGAAGATGGAAACACA 15194 Query 26933 CGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | ||| |||||| || || || || || || | || || ||||| Sbjct 15193 CTTCA-AGACTATTCAATCCAGAAGGACTCAACACTTCACCTCGTCCT 15147 >seq1024 Length=37034 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || ||||| |||||| ||||| | ||| ||| Sbjct 16931 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGCACATCACCCTCGAAGTCGAACCAACA 16872 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| ||||| | |||||| ||||| ||||||||||| || || || |||||| Sbjct 16871 GACCGTATCGAAGATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCAA 16812 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| | || |||||| | ||||| | | | | || ||||| | Sbjct 16811 CAACGTCTCATTTTTGCTGGTAAACAATTAGAAGACGGCAACACCCTCCAAGACTACTCC 16752 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| |||| || Sbjct 16751 ATCCAAAAGGATTCAACCCTCCACTTGGTTCT 16720 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || ||| |||||| ||||| | ||| ||| Sbjct 17615 ATGCAAATCTTCGTCAAAACCCTCACAGGCAAACACATCACCCTCGAAGTCGAACCAACA 17556 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| |||||| | |||||| ||||| ||||||||||| || || || |||||| Sbjct 17555 GACCGTATCGAGGACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCAA 17496 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || || |||||| | ||||| | | | | || ||||| | Sbjct 17495 CAACGTCTTATCTTCGCTGGTAAACAATTAGAAGACGGCAACACCCTCCAAGACTACTCC 17436 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| |||| || Sbjct 17435 ATCCAAAAGGACTCAACCCTCCACTTGGTTCT 17404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478653544745600