Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq576 96.9 3e-15 seq187 91.5 1e-13 seq1149 87.8 2e-12 seq1146 84.2 2e-11 >seq576 Length=101662 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | || ||||| || | ||||||||| || || | |||||||| || Sbjct 65856 AAGATGCAAATCTTCGTAAAGACTCTTACTGGAAAACACATCACACTTGAAGTCGAA-CC 65798 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| || |||||| | |||||| ||||| ||||| || || || || || || Sbjct 65797 AACAGATCGTATCGAGGACGTCAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGA 65738 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATT 24165 |||||| | | || | || ||| |||||||||||||| || | | || |||| || | Sbjct 65737 CCAACAGCGTTTAATCTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCAG-GACT 65679 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||||||| || |||||| |||| ||||| Sbjct 65678 ACTCCATTCAAAAGGACTCTACACTTCACTTAGT 65645 >seq187 Length=9559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | ||||| || || | || || || || ||| |||||||||| || Sbjct 4208 AAGATGCAAATCTTTGTTAAGACCCTTACAGGCAAGCACATCACCCTCGAAGTCGAA-CC 4266 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| ||| |||||| | |||||| ||||| ||||| ||||| || || || || Sbjct 4267 AACAGACCGTATCGAGGACGTCAAAGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGA 4326 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | || || | || ||| |||||||||||||| | || | | || || || Sbjct 4327 TCAACAACGTCTTATCTTCGCCGGTAAGCAACTCGAAGACGGCAACACCCTCCAAGACTA 4386 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||| ||||| || |||||| |||| Sbjct 4387 CTCCATCCAAAAGGACTCTACACTTCA 4413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || ||||| || || | |||||||| ||||| Sbjct 4439 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGCACATCACNCTTGAAGTCGAA-CCAAC 4497 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| |||||| | |||||| ||||| ||||| ||||| || || || ||||| Sbjct 4498 AGACCGTATCGAGGACGTCAAAGCNAAGATCCAAGACAAGGAAGGTATCCCACCAGATCA 4557 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATA 24168 ||| | || || | || ||| ||||||||||||||| || | | | ||| || || Sbjct 4558 ACAACGTCTTATCTTCGCCGGTAAGCAACTCGAAGATGGAAACACCCTTCA-AGACTACT 4616 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| |||||||| || || |||| || || Sbjct 4617 CCATCCAAAAAGACTCAACCCTTCACTTGGT 4647 >seq1149 Length=154106 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || |||||||| ||||||||| || ||| |||||||||| ||||| Sbjct 59806 ATGCAGATTTTCGTGAAAACATTGACTGGAAAACACATCACCCTCGAAGTCGAA-CCAAC 59864 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || | || ||| ||||| ||||| || || || || || ||||| Sbjct 59865 AGATCGTATTGAAGACGTGAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGATCA 59924 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATTATA 24168 ||| | || |||| || ||| |||||||||||||| || | | || ||| || || Sbjct 59925 ACAACGTCTTATTTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCA-AGACTACT 59983 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||| || || || | || ||||| Sbjct 59984 CCATTCAAAAGGATTCAACCCTCCACTTAGT 60014 >seq1146 Length=32655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 || ||||| || ||| || |||||||| ||||| || |||||||||||| | |||| Sbjct 29621 GTGAAACACAAAATTCAAGATAAAGAAGGAATACCACCAGATCAACAGAGATTAATTTTT 29680 Query 24126 GGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATC 24184 |||| ||||||||||||||| || | | | ||| |||||| ||| |||| || || Sbjct 29681 AGCGGAAAGCAACTCGAAGATGGAAATACTCTTCA-AGATTATTCCATCAAAAAGGACTC 29739 Query 24185 TACAATTCATTTAGT 24199 || |||| ||||| Sbjct 29740 CACTCTTCACTTAGT 29754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429928245029400