Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq576 89.7 5e-13 >seq576 Length=101662 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || ||||| || | || || |||||||||||| ||| || || Sbjct 65627 CCGCCACGAAGACGAAGGACTAAGTGAAGTGTAGAGTCCTTTTGAATGGAGTAGTC-CTG 65685 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | ||| ||| || || ||||| || ||| ||||||||||||| ||||| || || Sbjct 65686 AAGTGTGTTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATTAAACGCTGTTGGTCTGGTGG 65745 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| ||| || |||| | ||| | | ||| || | |||| Sbjct 65746 AATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTCCTCGATACGATCTGTTGGTTCGAC 65805 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | | ||| || || ||||| |||||||| || ||||| Sbjct 65806 TTCAAGTGTGATGTGTTTTCCAGTAAGAGTCTTTACGAAGATTTGCAT 65853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004067763200