Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq959 93.3 4e-14 seq785 89.7 4e-13 seq1024 86.0 5e-12 seq639 86.0 5e-12 seq576 86.0 5e-12 seq393 84.2 2e-11 seq710 82.4 7e-11 >seq959 Length=42966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 118/160 (74%), Gaps = 8/160 (5%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || || ||||||| ||||||| || | | Sbjct 25277 AATGCAAATTTTCGTCAAGACACTCACTGGAAAGCACATCACACTCGAAGTCGAACCAAC 25336 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| |||||| |||| |||| |||| || ||||||||||| |||||||| | Sbjct 25337 CGACCGTATCGAAGATGTCA---AAGCCAAAATCCAA-GACAAAGAAGGAATTCCACCCG 25392 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 | ||||| || | || || ||||| |||||||||||||| Sbjct 25393 ATCAACAACGTCTCATCTTCGCCGGTAAACAATTAGAAGA 25432 >seq785 Length=62999 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||| || | ||||| || | | Sbjct 32411 ATGCAGATCTTTGTGAAGACACTGACAGGGAAGCACATTACTCTGGAAGTTGAACCAACA 32470 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||| |||||| | ||| |||||| ||||||||||| |||||||| || ||| Sbjct 32471 GACAGAATCGAGGACGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 32530 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 || || | ||||| ||||| |||||||| ||||||| Sbjct 32531 CAACGTTTGATTTTCGCCGGAAAACAATTGGAAGATG 32567 >seq1024 Length=37034 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || |||||| | ||||| || | | Sbjct 17159 ATGCAAATCTTCGTTAAGACACTCACAGGAAAGCACATCACCCTTGAAGTCGAACCAACA 17100 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||| | ||| |||||| ||||||||||| |||||||| || ||| Sbjct 17099 GATCGTATCGAAGATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 17040 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 || || | |||||||| || |||||||||||||||| Sbjct 17039 CAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATG 17003 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || |||||| | ||||| || | | Sbjct 17387 ATGCAAATCTTCGTTAAGACACTCACAGGAAAGCACATCACCCTTGAAGTCGAACCAACA 17328 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||| | ||| |||||| ||||||||||| |||||||| || ||| Sbjct 17327 GATCGTATCGAAGATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 17268 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 || || | |||||||| || |||||||||||||||| Sbjct 17267 CAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATG 17231 >seq639 Length=86550 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| |||| || || ||| || | ||||| ||| | | Sbjct 86111 ATGCAAATCTTTGTTAAGACTCTGACTGGGAAGCACATTACGCTTGAAGTCGAGCCAACA 86170 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||| | ||| || ||| ||||| ||||| ||||| ||||| ||| Sbjct 86171 GATCGCATTGAGGACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAA 86230 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || ||||||||||| |||| ||| | || ||| Sbjct 86231 CAGCGTTTGATATTTGCAGGAAAACAATTAGAGGATGGAAACACCCTCCAAGACTACTCA 86290 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || ||| | ||||| Sbjct 86291 ATCCAAAAAGACTCGACTCTCCATCTTGTGCT 86322 >seq576 Length=101662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| | || || || ||| ||| | ||||| ||| | || Sbjct 65625 ATGCAGATTTTCGTAAAGACCCTTACTGGCAAGCACATTACACTTGAAGTCGAGCCAACT 65566 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||| || || | ||| | |||| ||| ||||| || || |||||||| || || Sbjct 65565 GACAGAATTGAAGATGTTAAGGCCAAAATTCAA-GACAAGGAGGGAATTCCACCAGATCA 65507 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 |||||| | |||||||| ||||||||||| ||||| Sbjct 65506 ACAGCGTTTGATTTTTGCTGGCAAACAATTGGAAGA 65471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||| | || || ||| ||||||| | ||||| || | | Sbjct 65853 ATGCAAATCTTCGTAAAGACTCTTACTGGAAAACACATCACACTTGAAGTCGAACCAACA 65794 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||||| ||| |||| || | || ||||| || || |||||||| || Sbjct 65793 GATCGTATCGAGGACGTCA---AAGCCAAGATCCAA-GACAAGGAGGGAATTCCACCAGA 65738 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG--ATCGCACTGTGGGCGAT 25172 ||||||||| | || || ||||| || ||| | ||||| | | | |||| | || Sbjct 65737 CCAACAGCGTTTAATCTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCAG--GAC 65680 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| |||||||| || || || || || ||||| || Sbjct 65679 TACTCCATTCAAAAGGACTCTACACTTCACTTAGTCCT 65642 >seq393 Length=120711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || || || ||| ||||||| ||| | | Sbjct 67382 AATGCAAATCTTCGTCAAGACACTTACAGGAAAGCATATTACACTCGAAGTCGAGCCAAC 67441 Query 25058 TGACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || |||||| | | | |||| || | ||| ||||||||||| |||||||| || | Sbjct 67442 CGATCGTATCGAAGACGTTAAAGCTAAGATTCAA-GACAAAGAAGGAATTCCACCAGATC 67500 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || ||||| || ||||||||||| | ||| | |||||| Sbjct 67501 AACAACGTCTCATCTTCGCCGGTAAGCAATTAGAAGACGGAAACACACTCCAAGATTACT 67560 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||||||| || || || || || Sbjct 67561 CAATTCAAAAGGACTCAACCCTTCA 67585 >seq710 Length=73582 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| |||| || || ||| || | || || ||| | | Sbjct 11597 ATGCAAATCTTTGTTAAGACTCTGACTGGGAAGCACATTACGCTTGAGGTCGAGCCAACA 11656 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||| ||| |||| || | || ||||| ||||| ||||| ||||| Sbjct 11657 GATCGCATTGAGGACGTCA---AAGCTAAGATCCAG-GACAAGGAAGGAATTCCCCCTGA 11712 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| || ||||||||||| |||| ||| | || || Sbjct 11713 TCAACAGCGTTTGATATTTGCAGGAAAACAATTAGAGGATGGAAACACCCTCCAAGACTA 11772 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||||||||| || || || ||| | ||||| Sbjct 11773 CTCAATTCAAAAAGATTCGACCCTTCATCTTGTGCT 11808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320183846200