Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq576 86.0 6e-12 >seq576 Length=101662 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| ||| ||||||| | |||| ||||||| | || ||||| Sbjct 65429 GTTGAATCCTTTTGGATGGAGTAATCTTGAAGGGTGTTTCCGTCTTCCAATTGTTTGCCA 65488 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | ||||| || || || |||||||| || || ||||| ||||| ||| Sbjct 65489 GCAAAAATCAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTA 65548 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| | || | | | ||| | || ||||| | || | | |||||| || | || Sbjct 65549 ACATCTTCAATTCTGTCAGTTGGCTCGACTTCAAGTGTAATGTGCTTGCCAGTAAGGGTC 65608 Query 64427 TTTACGAAAATTTGCAT 64443 ||||||||||| ||||| Sbjct 65609 TTTACGAAAATCTGCAT 65625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635556571200