Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq576 105 5e-18 seq548 91.5 1e-13 seq710 89.7 4e-13 seq1024 87.8 1e-12 seq959 86.0 4e-12 seq827 82.4 5e-11 seq716 82.4 5e-11 >seq576 Length=101662 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| ||||| ||||| ||| |||||| || | | ||||||| Sbjct 65416 AACCAAGTGGAGGGTTGAATCCTTTTGGATGGAGTAATCTTGAAGGGTGTTTCCGTCTTC 65475 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||||||||| | |||||||||||||| || ||||||||| |||||||| Sbjct 65476 CAATTGTTTGCCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTCTTG 65535 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||||| || ||| ||| || | || | || || || | |||||| || Sbjct 65536 AATTTTGGCCTTAACATCTTCAATTCTGTCAGTTGGCTCGACTTCAAGTGTAATGTGCTT 65595 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || ||||| ||||| |||||| Sbjct 65596 GCCAGTAAGGGTCTTTACGAAAATCTGCATA 65626 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGA-GAATTCTCGCGTCTTC 15026 ||||| ||||| ||||| || ||||| ||| ||| || |||| | | | ||||||| Sbjct 65645 ACTAAGTGAAGTGTAGAGTCCTTTTGAATGGAGTAGTC-CTGAAGTGTGTTTCCGTCTTC 65703 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | || |||||||||||||| ||||||||| |||||||| Sbjct 65704 GAGTTGCTTTCCGGCGAAGATTAAACGCTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTG 65763 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| || || ||| ||| | ||| || || | || ||| ||| Sbjct 65764 GATCTTGGCTTTGACGTCCTCGATACGATCTGTTGGTTCGACTTCAAGTGTGATGTGTTT 65823 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || ||||| ||||| || |||||||| ||| ||| Sbjct 65824 TCCAGTAAGAGTCTTTACGAAGATTTGCATCTTTAAAA 65861 >seq548 Length=109954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || ||||| ||||| || |||||| ||| | | ||||||| |||||| Sbjct 39729 TGGAGAGTTGAATCCTTTTGAATTGAGTAATCTTGGAGGGTGTTGCCGTCTTCCAATTGT 39788 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | |||||||| ||||| || |||||||||||||||||| |||||| Sbjct 39789 TTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTG 39848 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || || || | || | ||| || || | |||||| || |||||| Sbjct 39849 GCCTTGACGTCCTCGATGCTGTCTGTTGGTTCAACTTCCAGAGTAATGTGCTTCCCTGTC 39908 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || ||||| Sbjct 39909 AGCGTCTTTACGAAGATCTGCAT 39931 >seq710 Length=73582 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| ||||||||||| || ||| || ||| | | | || |||||||| Sbjct 11800 ATGAAGGGTCGAATCTTTTTGAATTGAGTAGTCTTGGAGGGTGTTTCCATCCTCTAATTG 11741 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || || |||||||||||||||| || ||||||||||||||||| || || Sbjct 11740 TTTTCCTGCAAATATCAAACGCTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTT 11681 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| || || || ||| | || || || | |||||| || || || Sbjct 11680 AGCTTTGACGTCCTCAATGCGATCTGTTGGCTCGACCTCAAGCGTAATGTGCTTCCCAGT 11621 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || ||||| |||||||| Sbjct 11620 CAGAGTCTTAACAAAGATTTGCAT 11597 >seq1024 Length=37034 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| ||||| ||||| ||| ||| || ||| | | ||||||| Sbjct 16722 AACCAAGTGGAGGGTTGAATCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGCCGTCTTC 16781 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||||||| ||||| | || | ||| ||||| || ||| || ||||| ||||| Sbjct 16782 TAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 16841 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| ||| ||| ||| || | ||| || || | ||| ||| || Sbjct 16842 GATCTTGGCTTTGACATCTTCGATACGGTCTGTTGGTTCGACTTCGAGGGTGATGTGCTT 16901 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||| || || ||||||||| Sbjct 16902 TCCTGTGAGGGTTTTGACGAAGATTTGCATA 16932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || ||||| ||| ||| || ||| | | | ||||| Sbjct 16950 AACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTTCCATCTTC 17009 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||||||| ||||| | || | ||| ||||| || |||||||||||| ||||| Sbjct 17010 TAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 17069 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| ||| ||| ||| | ||| || || | ||| ||| || Sbjct 17070 GATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATGTGCTT 17129 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || || ||||||||| Sbjct 17130 TCCTGTGAGTGTCTTAACGAAGATTTGCATA 17160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || ||||| ||| ||| || ||| | | | ||||| Sbjct 17178 AACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTTCCATCTTC 17237 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||||||| ||||| | || | ||| ||||| || |||||||||||| ||||| Sbjct 17238 TAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 17297 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| ||| ||| ||| | ||| || || | ||| ||| || Sbjct 17298 GATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATGTGCTT 17357 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || || ||||||||| Sbjct 17358 TCCTGTGAGTGTCTTAACGAAGATTTGCATA 17388 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || ||||| ||| ||| || ||| | | ||||||| Sbjct 17406 AACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGCCGTCTTC 17465 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||||||| |||||| | || | ||| ||||| || ||| || ||||| ||||| Sbjct 17466 TAATTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 17525 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| || || ||| || | ||| || || | ||| ||| ||| Sbjct 17526 GATCTTGGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCGAGGGTGATGTGTTT 17585 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || || |||||||| Sbjct 17586 GCCTGTGAGGGTTTTGACGAAGATTTGCAT 17615 >seq959 Length=42966 Score = 86.0 bits (94), Expect = 4e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079 |||||||||||||||| || ||| | || | ||| ||||| ||| |||||||||||| | Sbjct 25434 CGTCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTT 25375 Query 15080 TGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAA 15139 |||| |||||| ||| ||| ||| ||| ||| | ||| || || | || | Sbjct 25374 TGTCTTGGATTTTGGCTTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCGAGTGTGA 25315 Query 15140 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || || || || || || || ||||||||||| | |||| Sbjct 25314 TGTGCTTTCCAGTGAGTGTCTTGACGAAAATTTGCATTTACGAAA 25270 >seq827 Length=184754 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || ||||||||||| || |||||| ||| | | ||||||| |||||| Sbjct 149056 TGGAGAGTTGAATCTTTTTGGATTGAGTAATCTTGGAGGGTGTTTCCGTCTTCCAATTGT 148997 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||||||| ||||| || |||||||||||||||||| |||||| Sbjct 148996 TTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTG 148937 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || || || | || | ||| || || | || ||| || || ||| Sbjct 148936 GCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTGATGTGCTTCCCAGTC 148877 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 148876 AGCGTCTTCACAAAGATCTGCAT 148854 >seq716 Length=195740 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || ||||| ||| |||||| ||| | | | ||||| | ||| Sbjct 164626 TGGAGTGTTGAGTCCTTTTGAATGGAGTAATCTTGAAGAGTGTTTCCATCTTCGAGTTGC 164567 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || ||||| |||||||| ||||||||||||||| || ||||||| Sbjct 164566 TTTCCAGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGAATTTTG 164507 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| ||| ||| ||| | ||| || || | || || || ||||| Sbjct 164506 GCCTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCAAGTGTGATATGCTTGCCTGTG 164447 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || |||||||| Sbjct 164446 AGTGTTTTCACGAAGATTTGCAT 164424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357385553541800