Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq785 102 7e-17 seq548 102 7e-17 seq716 95.1 1e-14 seq827 93.3 4e-14 seq639 93.3 4e-14 seq582 93.3 4e-14 seq576 89.7 5e-13 seq176 89.7 5e-13 seq710 84.2 2e-11 seq1024 82.4 7e-11 seq959 82.4 7e-11 >seq785 Length=62999 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45108 TTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAA 45167 ||| | || || ||||| | | ||| || || || ||||| || |||||||| || Sbjct 32643 TTTTTACCGCCACGGAGACGAAGCACAAGGTGGAGAGTTGAATCTTTTTGGATTGAGTAG 32584 Query 45168 TCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 || || ||| || ||| |||||||||||||| ||| | ||||| ||||| || || Sbjct 32583 TCTTGGAGGGTGTTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAAACGTTGTTGATCT 32524 Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGAC 45287 || ||||| |||||||| ||||| ||||| |||| | || | |||| | | Sbjct 32523 GGTGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGT 32464 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||||| || || || || || || ||||| || |||||| Sbjct 32463 TCAACTTCCAGAGTAATGTGCTTCCCTGTCAGTGTCTTCACAAAGATCTGCATC 32410 >seq548 Length=109954 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 45108 TTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAA 45167 ||| | || || ||||| | | ||| || || || ||||| |||||||| || ||| Sbjct 39699 TTTTTACCACCACGGAGACGAAGCACAAGGTGGAGAGTTGAATCCTTTTGAATTGAGTAA 39758 Query 45168 TCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 || || ||| || || |||||||||||||| ||| | ||||| ||||| || || Sbjct 39759 TCTTGGAGGGTGTTGCCGTCTTCCAATTGTTTTCCAGCGAAGATCAAACGTTGTTGATCT 39818 Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGAC 45287 || ||||| ||||| || ||||| ||||| |||| | || | | |||| | | Sbjct 39819 GGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTCCTCGATGCTGTCTGTTGGT 39878 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||||| || || || || || ||||| || || |||||| Sbjct 39879 TCAACTTCCAGAGTAATGTGCTTCCCTGTCAGCGTCTTTACGAAGATCTGCATC 39932 >seq716 Length=195740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG-GTTTTAGAATCGTC 45190 || || || || ||||| |||||||| || ||||| ||| | || || ||| || Sbjct 164632 ACAAGGTGGAGTGTTGAGTCCTTTTGAATGGAGTAATCT-TGAAGAGTGTTTCCATCTTC 164574 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| ||||| ||| | || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 164573 GAGTTGCTTTCCAGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCTTG 164514 Query 45251 AATTTTTTGTTTGATCGCTTC--TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||||| |||| |||| |||| ||||| | |||||||| || || | Sbjct 164513 AATTTTGGCCTTGACATCTTCGATACG--GTCGGTTGGTTCGACTTCAAGTGTGATATGC 164456 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| || || |||||||| Sbjct 164455 TTGCCTGTGAGTGTTTTCACGAAGATTTGCAT 164424 >seq827 Length=184754 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45108 TTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAA 45167 ||| | || || ||||| | | ||| || || || ||||| || |||||||| ||| Sbjct 149086 TTTTTACCACCACGGAGACGAAGCACAAGGTGGAGAGTTGAATCTTTTTGGATTGAGTAA 149027 Query 45168 TCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 || || ||| || || |||||||||||||| ||| | ||||| ||||| || || Sbjct 149026 TCTTGGAGGGTGTTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCT 148967 Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGAC 45287 || ||||| ||||| || ||||| ||||| |||| | || | |||| | | Sbjct 148966 GGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGT 148907 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| | || || || || || || ||||| || |||||| Sbjct 148906 TCAACTTCCAGAGTGATGTGCTTCCCAGTCAGCGTCTTCACAAAGATCTGCATC 148853 >seq639 Length=86550 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45108 TTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAA 45167 ||| | || || ||||| | | ||| ||||| || || || || |||||||| || Sbjct 86343 TTTTTACCACCACGGAGACGAAGCACAAGATGGAGAGTCGAGTCTTTTTGGATTGAGTAG 86284 Query 45168 TCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 || || ||| || ||| || |||||||||||||| ||||||| || || || || Sbjct 86283 TCTTGGAGGGTGTTTCCATCCTCTAATTGTTTTCCTGCAAATATCAAACGCTGTTGATCA 86224 Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGAC 45287 || ||||| ||||| || || || || || |||| | || | | || | | | Sbjct 86223 GGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTCCTCAATGCGATCTGTTGGC 86164 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| || |||| || || || ||||| || ||||| ||||||||| Sbjct 86163 TCGACTTCAAGCGTAATGTGCTTCCCAGTCAGAGTCTTAACAAAGATTTGCATC 86110 >seq582 Length=225330 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45108 TTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAA 45167 ||| | || |||||||| | | || || || ||||| || || || || || |||| Sbjct 127374 TTTTTACCGCCGCGGAGACGAAGAACGAGGTGAAGCGTAGAGTCTTTCTGAATTGAATAA 127315 Query 45168 TCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 || | ||| || ||| ||||||||||||||||| ||||||| || || || || Sbjct 127314 TCTTGAAGGGTGTTTCCATCCTCCAATTGTTTTCCTGCAAATATCAAACGCTGTTGATCA 127255 Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGAC 45287 || ||||| ||||| ||||| || || || |||| | || | | || | | | Sbjct 127254 GGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTCCTCAATGCGATCTGTGGGC 127195 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || |||| || ||||| ||||| || || || ||||||||| Sbjct 127194 TCGACCTCAAGCGTAATATGCTTTCCGGTCAGAGTCTTCACGAAGATTTGCATC 127141 >seq576 Length=101662 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| ||||| | ||| || || ||||||||| Sbjct 65423 TGGAGGGTTGAATCCTTTTGGATGGAGTAATCTTGAAGGGTGTTTCCGTCTTCCAATTGT 65482 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| || || || || || ||||| || || || ||||||||||| Sbjct 65483 TTGCCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTCTTGAATTTTG 65542 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | |||| | |||| | | ||||||||| || |||| ||||| || Sbjct 65543 GCCTTAACATCTTCAATTCTGTCAGTTGGCTCGACTTCAAGTGTAATGTGCTTGCCAGTA 65602 Query 45318 AGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 || || ||||| ||||| ||||| ||| || || Sbjct 65603 AGGGTCTTTACGAAAATCTGCATACCGCCACGAA 65636 >seq176 Length=130081 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45108 TTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAA 45167 ||| | || || ||||| | | ||| || || || ||||| |||||||| || || Sbjct 85234 TTTTTACCACCACGGAGACGAAGCACAAGGTGGAGAGTTGAGTCCTTTTGAATTGAGTAG 85175 Query 45168 TCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 || || ||| || || |||||||||||||| ||| | ||||| ||||| || || Sbjct 85174 TCTTGGAGGGTGTTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCT 85115 Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGAC 45287 || || || |||||||| ||||| ||||| |||| | || | |||| | | Sbjct 85114 GGGGGGATTCCTTCTTTGTCTTGGATTTTAGCCTTGACGTCCTCGATTCTGTCTGTTGGT 85055 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || |||| || || || || || || ||||| || |||||| Sbjct 85054 TCAACTTCCAGTGTAATGTGCTTCCCTGTCAGCGTCTTGACAAAGATCTGCATC 85001 >seq710 Length=73582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45108 TTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAA 45167 ||| | || || || || | | ||| ||||| || || || || ||||| || || Sbjct 11829 TTTTTACCACCACGAAGACGAAGCACAAGATGAAGGGTCGAATCTTTTTGAATTGAGTAG 11770 Query 45168 TCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 || || ||| || ||| || |||||||||||||| ||||||| || || || || Sbjct 11769 TCTTGGAGGGTGTTTCCATCCTCTAATTGTTTTCCTGCAAATATCAAACGCTGTTGATCA 11710 Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGAC 45287 || ||||| ||||| || || || || || ||||| | || | | || | | | Sbjct 11709 GGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTCCTCAATGCGATCTGTTGGC 11650 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || |||| || || || ||||| || ||||| ||||||||| Sbjct 11649 TCGACCTCAAGCGTAATGTGCTTCCCAGTCAGAGTCTTAACAAAGATTTGCATC 11596 >seq1024 Length=37034 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || || || ||| || || || |||||| Sbjct 17413 TGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGCCGTCTTCTAATTGT 17472 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||| || || || || || |||||||| ||||| || || Sbjct 17473 TTACCAGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 17532 Query 45258 TGTTTGATCGCTTC--TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||||| | || |||| ||| | | ||||||||||| || | |||||| | Sbjct 17533 GCTTTGACGTCCTCGATACG--GTCTGTTGGTTCGACTTCGAGGGTGATGTGTTTGCCTG 17590 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 | || ||||| || || ||||||||| Sbjct 17591 TGAGGGTTTTGACGAAGATTTGCATC 17616 >seq959 Length=42966 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| ||||| ||||| || || || || || || || Sbjct 25486 ACGAGGTGAAGTGTTGAGTCCTTCTGGATTGAGTAGTCTTGGAGTGTATTTCCGTCTTCT 25427 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || ||| | || | ||||| || || || ||||| |||||||| ||||| Sbjct 25426 AATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCTTGG 25367 Query 45252 ATTTTTTGTTTGATCGCTTC--TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||| ||||| |||| |||||| ||| | ||||||||||| || | | Sbjct 25366 ATTTTGGCTTTGACATCTTCGATACGGT--CGGTTGGTTCGACTTCGAGTGTGATGTGCT 25309 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || || ||||||||||| Sbjct 25308 TTCCAGTGAGTGTCTTGACGAAAATTTGCAT 25278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994837940800