Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq716 109 1e-18 seq785 102 2e-16 seq827 98.7 2e-15 seq176 93.3 1e-13 seq187 91.5 3e-13 seq576 87.8 4e-12 seq959 86.0 1e-11 seq788 86.0 1e-11 seq639 84.2 5e-11 >seq716 Length=195740 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||||||||| || || |||||||| | | ||| || | ||| Sbjct 164644 CGAAGACGAAGAACAAGGTGGAGTGTTGAGTCCTTTTGAATGGAGTAATCTTGAAGAGTG 164585 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||| || |||||||| ||||| || | ||| || ||||| || ||||||| Sbjct 164584 TTTCCATCTTCGAGTTGCTTTCCAGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCT 164525 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||| || ||||| ||| |||| ||| || || | Sbjct 164524 TCCTTATCTTGAATTTTGGCCTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCAAGT 164465 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||| || ||||| |||||||| || ||||| Sbjct 164464 GTGATATGCTTGCCTGTGAGTGTTTTCACGAAGATTTG 164427 >seq785 Length=62999 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| || || ||||||| |||||| | || |||||||| Sbjct 32622 AGCACAAGGTGGAGAGTTGAATCTTTTTGGATTGAGTAGTCTTGGAGGGTGTTTCCATCT 32563 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || ||||||||||| || | ||| || || || || |||||||||| || Sbjct 32562 TCCAATTGTTTTCCGGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCT 32503 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| |||| ||||||||| ||| || |||| || || | Sbjct 32502 TGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTAATGTGC 32443 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 32442 TTCCCTGTCAGTGTCTTCACAAAGATCTG 32414 >seq827 Length=184754 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| || || ||||||| ||| || | || |||| ||| Sbjct 149065 AGCACAAGGTGGAGAGTTGAATCTTTTTGGATTGAGTAATCTTGGAGGGTGTTTCCGTCT 149006 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || |||||||||||||| | ||| || || || || ||||||||| || Sbjct 149005 TCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCT 148946 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| |||| ||||||||| ||| || |||| ||||| | Sbjct 148945 TGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTGATGTGC 148886 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 148885 TTCCCAGTCAGCGTCTTCACAAAGATCTG 148857 >seq176 Length=130081 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| || |||||||| | |||||| | || |||| ||| Sbjct 85213 AGCACAAGGTGGAGAGTTGAGTCCTTTTGAATTGAGTAGTCTTGGAGGGTGTTTCCGTCT 85154 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || |||||||||||||| | ||| || || || || ||||||||| || Sbjct 85153 TCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCT 85094 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| |||| ||||||||| ||| || |||| || || | Sbjct 85093 TGGATTTTAGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGTGTAATGTGC 85034 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| || || Sbjct 85033 TTCCCTGTCAGCGTCTTGACAAAGATCTG 85005 >seq187 Length=9559 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || || || |||||||||| | |||||| | || Sbjct 4431 CGAAGACGAAGGACAAGGTGAAGTGTAGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTG 4372 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || ||||| ||||||||||| ||||| || || || || || ||| Sbjct 4371 TTGCCGTCTTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCT 4312 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || ||| |||| |||||||| ||| || || | Sbjct 4311 TCCTTGTCTTGGATCTTAGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCGAGG 4252 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||| || || || || || ||||| ||||| Sbjct 4251 GTGATGTGCTTGCCTGTAAGGGTCTTAACAAAGATTTG 4214 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || || ||||||| | |||||| | || |||||||| Sbjct 4650 AGAACCAAGTGAAGGGTTGAGTCTTTTTGGATGGAGTAGTCTTGAAGGGTGTTTCCATCT 4591 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| ||||| || || || || || ||||| || Sbjct 4590 TCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCT 4531 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| |||| |||||||| ||| || || | ||||| | Sbjct 4530 TGGATCTTNGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCAAGNGTGATGTGC 4471 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || ||||| Sbjct 4470 TTTCCTGTGAGGGTTTTGACGAAGATTTG 4442 >seq576 Length=101662 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| || || || |||||||| | | |||||| | || Sbjct 65633 CGAAGACGAAGGACTAAGTGAAGTGTAGAGTCCTTTTGAATGGAGTAGTCCTGAAGTGTG 65692 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||| ||||| || ||||||||||||||||| | |||||| ||||| || |||||| Sbjct 65693 TTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATTAAACGCTGTTGGTCTGGTGGAATTCCC 65752 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || ||| |||| ||||||| ||| || || | Sbjct 65753 TCCTTGTCTTGGATCTTGGCTTTGACGTCCTCGATACGATCTGTTGGTTCGACTTCAAGT 65812 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || ||||| Sbjct 65813 GTGATGTGTTTTCCAGTAAGAGTCTTTACGAAGATTTG 65850 >seq959 Length=42966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || || ||||| |||| |||||| | || Sbjct 25498 CGAAGACGGAGAACGAGGTGAAGTGTTGAGTCCTTCTGGATTGAGTAGTCTTGGAGTGTA 25439 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||| ||||| | || || ||||||||||||||||| || || || || ||||||| Sbjct 25438 TTTCCGTCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCT 25379 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| || || || ||||| ||| |||| ||| || || | Sbjct 25378 TCTTTGTCTTGGAT-TTTGGCTTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCGAG 25320 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||| || ||||| || || || |||||||| Sbjct 25319 TGTGATGTGCTTTCCAGTGAGTGTCTTGACGAAAATTTG 25281 >seq788 Length=62525 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTG--TAGTCAGCCAAAG 199466 ||||| | ||||| ||||| || || || ||||| |||| ||| ||||| | | Sbjct 15138 CGAAGACGGAGGACGAGGTGAAGTGTTGAGTCCTTCTGGA--TTGAATAGTCTTGAAGTG 15195 Query 199467 TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526 | |||||||||| || ||||| || |||||||||||||| || || || || || | Sbjct 15196 TGTTTCCATCTTCGAGTTGCTTGCCAGCGAAGATGAGACGTTGTTGATCTGGTGGGATAC 15255 Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || || ||||| ||| ||| ||||| || |||| ||| || || | Sbjct 15256 CTTCCTTGTCTTGGATCTTGGCCTTGACGTCTTCGATACGATCAGTTGGTTCGACTTCGA 15315 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || || ||||| || || || |||||||| |||||| Sbjct 15316 GTGTGATGTGTTTGCCGGTGAGTGTCTTGACGAAAATTTG---CATTTT 15361 >seq639 Length=86550 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||||||||| || ||||||| |||||| | || ||||||| Sbjct 86322 AGCACAAGATGGAGAGTCGAGTCTTTTTGGATTGAGTAGTCTTGGAGGGTGTTTCCATCC 86263 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | || ||||| || || || | |||||| || || || ||||||||| ||| Sbjct 86262 TCTAATTGTTTTCCTGCAAATATCAAACGCTGTTGATCAGGGGGAATTCCTTCCTTGTCC 86203 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | | ||||||| || || || | ||| || | Sbjct 86202 TGGATCTTAGCCTTGACGTCCTCAATGCGATCTGTTGGCTCGACTTCAAGCGTAATGTGC 86143 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| ||||| Sbjct 86142 TTCCCAGTCAGAGTCTTAACAAAGATTTG 86114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178899244699160